Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
Location | 2536142..2536659 | Replicon | chromosome |
Accession | NZ_CP019590 | ||
Organism | Staphylococcus aureus strain C2406 |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | T1YC79 |
Locus tag | BJN19_RS13365 | Protein ID | WP_000113262.1 |
Coordinates | 2536142..2536408 (-) | Length | 89 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | A0A5A8VWS3 |
Locus tag | BJN19_RS13370 | Protein ID | WP_000584502.1 |
Coordinates | 2536408..2536659 (-) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
BJN19_RS13340 | 2531568..2532104 | - | 537 | WP_000169317.1 | GNAT family N-acetyltransferase | - |
BJN19_RS13345 | 2532337..2533161 | - | 825 | WP_000572040.1 | formate/nitrite transporter family protein | - |
BJN19_RS13350 | 2533378..2533560 | - | 183 | WP_000230294.1 | hypothetical protein | - |
BJN19_RS13355 | 2533644..2534111 | - | 468 | WP_000153344.1 | SRPBCC domain-containing protein | - |
BJN19_RS13360 | 2534297..2535847 | - | 1551 | WP_000727762.1 | zinc ABC transporter substrate-binding lipoprotein AdcA | - |
BJN19_RS15240 | 2536036..2536107 | - | 72 | Protein_2470 | hypothetical protein | - |
BJN19_RS13365 | 2536142..2536408 | - | 267 | WP_000113262.1 | Txe/YoeB family addiction module toxin | Toxin |
BJN19_RS13370 | 2536408..2536659 | - | 252 | WP_000584502.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
BJN19_RS13375 | 2536824..2536925 | - | 102 | WP_001791744.1 | hypothetical protein | - |
BJN19_RS13380 | 2536932..2537531 | - | 600 | WP_000162813.1 | DsbA family protein | - |
BJN19_RS13385 | 2537550..2537909 | - | 360 | WP_000819847.1 | DUF4467 domain-containing protein | - |
BJN19_RS13390 | 2538164..2539414 | + | 1251 | WP_001012222.1 | FemA/FemB family glycyltransferase FmhA | - |
BJN19_RS13395 | 2539511..2540242 | - | 732 | WP_000615461.1 | amino acid ABC transporter ATP-binding protein | - |
BJN19_RS13400 | 2540239..2540958 | - | 720 | WP_000479576.1 | amino acid ABC transporter permease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10437.95 Da Isoelectric Point: 9.9143
>T72734 WP_000113262.1 NZ_CP019590:c2536408-2536142 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
Download Length: 267 bp
>T72734 NZ_CP019590:c2536408-2536142 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9417.65 Da Isoelectric Point: 4.4702
>AT72734 WP_000584502.1 NZ_CP019590:c2536659-2536408 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSVMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
MIIKNYSYARQNLKALMTKVNDDSVMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
Download Length: 252 bp
>AT72734 NZ_CP019590:c2536659-2536408 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGTTATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGTTATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
PDB | 6L8G | |
PDB | 6L8F | |
PDB | 7CUA | |
PDB | 6L8E |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A5A8VWS3 |