Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) DinJ-YafQ (relBE)/YafQ-RelB
Location 618733..619274 Replicon chromosome
Accession NZ_CP019256
Organism Escherichia coli strain 13TMH22

Toxin (Protein)


Gene name yafQ Uniprot ID U9XPG0
Locus tag BWI85_RS03425 Protein ID WP_000615976.1
Coordinates 618996..619274 (+) Length 93 a.a.

Antitoxin (Protein)


Gene name dinJ Uniprot ID S1EWQ0
Locus tag BWI85_RS03420 Protein ID WP_000729704.1
Coordinates 618733..618993 (+) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BWI85_RS03395 614516..615301 - 786 WP_000207590.1 putative lateral flagellar export/assembly protein LafU -
BWI85_RS03400 615273..616985 + 1713 Protein_610 flagellar biosynthesis protein FlhA -
BWI85_RS03405 617090..617368 + 279 WP_000598760.1 type II toxin-antitoxin system HicA family toxin -
BWI85_RS03410 617361..617717 + 357 WP_001030483.1 type II toxin-antitoxin system HicB family antitoxin -
BWI85_RS03415 617774..618547 - 774 WP_000543895.1 C40 family peptidase -
BWI85_RS03420 618733..618993 + 261 WP_000729704.1 type II toxin-antitoxin system antitoxin DinJ Antitoxin
BWI85_RS03425 618996..619274 + 279 WP_000615976.1 type II toxin-antitoxin system mRNA interferase toxin YafQ Toxin
BWI85_RS03430 619430..620170 + 741 WP_001225679.1 murein L,D-transpeptidase -
BWI85_RS03435 620141..620908 - 768 WP_000333380.1 class II glutamine amidotransferase -
BWI85_RS03440 621114..621692 - 579 WP_000284050.1 D-sedoheptulose 7-phosphate isomerase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(1-91)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(4-84)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10800.59 Da        Isoelectric Point: 10.0702

>T72008 WP_000615976.1 NZ_CP019256:618996-619274 [Escherichia coli]
MIQRDIEYSGQFSKDVKLAQKRHKDMNKLKYLMTLLINNALPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLR
FERTGTHAALFG

Download         Length: 279 bp

>T72008 NZ_CP019256:618996-619274 [Escherichia coli]
ATGATTCAAAGGGATATTGAATACTCGGGACAATTTTCAAAGGATGTAAAACTTGCACAAAAGCGTCATAAGGATATGAA
TAAATTGAAATATCTTATGACGCTTCTTATCAATAATGCTTTACCGCTTCCAGCTGTTTATAAAGACCACCCGCTGCAAG
GTTCATGGAAAGGTTATCGCGATGCTCATGTCGAACCGGACTGGATCCTGATTTACAAACTTACCGATAAACTTTTACGA
TTTGAGAGAACTGGAACTCACGCGGCGCTCTTTGGGTAA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9391.77 Da        Isoelectric Point: 5.0758

>AT72008 WP_000729704.1 NZ_CP019256:618733-618993 [Escherichia coli]
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGVDVHKAKDADDL
FDKLGI

Download         Length: 261 bp

>AT72008 NZ_CP019256:618733-618993 [Escherichia coli]
ATGGCTGCTAACGCATTTGTTCGCGCCCGAATCGATGAAGATCTGAAGAATCAGGCGGCGGACGTACTGGCCGGGATGGG
GCTGACCATCTCTGACCTGGTTCGCATAACCCTCACAAAGGTCGCGCGTGAAAAGGCATTGCCGTTTGATTTACGCGAGC
CTAATCAATTAACCATTCAATCAATCAAAAACAGCGAAGCTGGCGTTGATGTTCATAAGGCCAAAGACGCCGATGATTTA
TTTGATAAATTAGGAATTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB U9XPG0

Antitoxin

Source ID Structure
PDB 4ML0
AlphaFold DB A0A0E0Y6Z6

References