Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/COG4683-HTH_37 |
Location | 50151..50808 | Replicon | plasmid pKp_Goe_832-2 |
Accession | NZ_CP018698 | ||
Organism | Klebsiella pneumoniae strain Kp_Goe_149832 |
Toxin (Protein)
Gene name | higB | Uniprot ID | U3PDC3 |
Locus tag | BB751_RS29745 | Protein ID | WP_000270043.1 |
Coordinates | 50151..50501 (+) | Length | 117 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | - |
Locus tag | BB751_RS29750 | Protein ID | WP_000124640.1 |
Coordinates | 50506..50808 (+) | Length | 101 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
BB751_RS29690 | 45462..45641 | + | 180 | Protein_59 | helix-turn-helix transcriptional regulator | - |
BB751_RS29695 | 45706..46410 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
BB751_RS29705 | 46625..47122 | - | 498 | WP_000062185.1 | hypothetical protein | - |
BB751_RS29710 | 47125..47613 | - | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
BB751_RS29715 | 47710..48045 | + | 336 | WP_000683476.1 | hypothetical protein | - |
BB751_RS29720 | 48060..48530 | - | 471 | WP_001281821.1 | hypothetical protein | - |
BB751_RS29725 | 48523..48894 | - | 372 | WP_000516916.1 | hypothetical protein | - |
BB751_RS29730 | 48905..49099 | - | 195 | WP_000343597.1 | hypothetical protein | - |
BB751_RS29740 | 49440..49988 | - | 549 | WP_001061574.1 | transcriptional regulator | - |
BB751_RS29745 | 50151..50501 | + | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
BB751_RS29750 | 50506..50808 | + | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin |
BB751_RS29755 | 50835..51128 | - | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
BB751_RS29760 | 51216..51488 | - | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
BB751_RS29765 | 51546..52073 | - | 528 | WP_001236377.1 | thermonuclease family protein | - |
BB751_RS29775 | 52304..53161 | - | 858 | WP_001167032.1 | hypothetical protein | - |
BB751_RS29780 | 53148..53378 | - | 231 | WP_000972663.1 | hypothetical protein | - |
BB751_RS29785 | 53378..53896 | - | 519 | WP_000210756.1 | nitrite reductase | - |
BB751_RS29790 | 53893..54339 | - | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
BB751_RS29795 | 54339..54698 | - | 360 | WP_000422768.1 | hypothetical protein | - |
BB751_RS29800 | 54755..55183 | - | 429 | WP_000591074.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Conjugative plasmid | sul2 / aph(3'')-Ib / aph(6)-Id / tet(A) / floR / sul1 / qacE / aac(6')-Ib | - | 1..96072 | 96072 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 117 a.a. Molecular weight: 13328.21 Da Isoelectric Point: 5.2421
>T70268 WP_000270043.1 NZ_CP018698:50151-50501 [Klebsiella pneumoniae]
MWVIETTDTFDEWFDALDDTDRANVLASMMVLRDRGPMLSRPYADTVNGSSYSNMKELRVQSKGDPIRAFFAFDPKRKGI
LLCAGNKTGDEKRFYEVMIPIADREFAAHLDKLKKE
MWVIETTDTFDEWFDALDDTDRANVLASMMVLRDRGPMLSRPYADTVNGSSYSNMKELRVQSKGDPIRAFFAFDPKRKGI
LLCAGNKTGDEKRFYEVMIPIADREFAAHLDKLKKE
Download Length: 351 bp
>T70268 NZ_CP018698:50151-50501 [Klebsiella pneumoniae]
ATGTGGGTCATCGAGACAACCGACACCTTTGATGAGTGGTTCGATGCTCTGGATGATACCGATAGAGCAAACGTGCTGGC
TTCGATGATGGTGCTGCGAGATAGAGGCCCCATGCTGTCGAGGCCATACGCGGATACTGTTAACGGTTCATCCTACAGCA
ACATGAAAGAGCTTCGGGTCCAAAGCAAAGGAGATCCTATCAGAGCGTTCTTTGCGTTCGATCCAAAGCGTAAGGGGATT
CTTCTCTGCGCCGGTAACAAGACCGGGGACGAGAAAAGGTTTTATGAAGTAATGATCCCAATTGCAGACCGTGAGTTTGC
GGCGCACTTGGATAAATTGAAGAAGGAGTGA
ATGTGGGTCATCGAGACAACCGACACCTTTGATGAGTGGTTCGATGCTCTGGATGATACCGATAGAGCAAACGTGCTGGC
TTCGATGATGGTGCTGCGAGATAGAGGCCCCATGCTGTCGAGGCCATACGCGGATACTGTTAACGGTTCATCCTACAGCA
ACATGAAAGAGCTTCGGGTCCAAAGCAAAGGAGATCCTATCAGAGCGTTCTTTGCGTTCGATCCAAAGCGTAAGGGGATT
CTTCTCTGCGCCGGTAACAAGACCGGGGACGAGAAAAGGTTTTATGAAGTAATGATCCCAATTGCAGACCGTGAGTTTGC
GGCGCACTTGGATAAATTGAAGAAGGAGTGA
Antitoxin
Download Length: 101 a.a. Molecular weight: 11006.73 Da Isoelectric Point: 7.2036
>AT70268 WP_000124640.1 NZ_CP018698:50506-50808 [Klebsiella pneumoniae]
MARTLDQMLATEKPEVVAKAQKAATEMLLNIHLAELRDRMNLTQGEIAASLGVRQPTVSEMEKPGRDLKLSSIKRYVEAS
GGKLRLDVELPDGTHYGFAV
MARTLDQMLATEKPEVVAKAQKAATEMLLNIHLAELRDRMNLTQGEIAASLGVRQPTVSEMEKPGRDLKLSSIKRYVEAS
GGKLRLDVELPDGTHYGFAV
Download Length: 303 bp
>AT70268 NZ_CP018698:50506-50808 [Klebsiella pneumoniae]
ATGGCAAGAACTCTTGACCAAATGCTGGCAACAGAAAAGCCTGAGGTTGTTGCCAAAGCACAGAAAGCGGCCACTGAGAT
GTTACTGAACATCCACTTGGCAGAGCTTCGTGATCGCATGAACCTTACCCAGGGGGAAATTGCTGCATCTCTGGGTGTGA
GACAGCCGACAGTCTCCGAGATGGAAAAACCTGGACGAGATCTCAAGCTGTCGTCCATTAAGCGGTACGTTGAGGCCTCC
GGTGGCAAGCTACGCCTCGATGTTGAACTTCCGGACGGCACCCACTACGGCTTTGCCGTTTAA
ATGGCAAGAACTCTTGACCAAATGCTGGCAACAGAAAAGCCTGAGGTTGTTGCCAAAGCACAGAAAGCGGCCACTGAGAT
GTTACTGAACATCCACTTGGCAGAGCTTCGTGATCGCATGAACCTTACCCAGGGGGAAATTGCTGCATCTCTGGGTGTGA
GACAGCCGACAGTCTCCGAGATGGAAAAACCTGGACGAGATCTCAAGCTGTCGTCCATTAAGCGGTACGTTGAGGCCTCC
GGTGGCAAGCTACGCCTCGATGTTGAACTTCCGGACGGCACCCACTACGGCTTTGCCGTTTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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