Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) yafN-yafO (relBE)/YafO-YafN
Location 288108..288802 Replicon chromosome
Accession NZ_CP018109
Organism Escherichia coli strain MRSN346595

Toxin (Protein)


Gene name yafO Uniprot ID Q47157
Locus tag BSG21_RS01385 Protein ID WP_001263489.1
Coordinates 288404..288802 (+) Length 133 a.a.

Antitoxin (Protein)


Gene name yafN Uniprot ID S1QAE3
Locus tag BSG21_RS01380 Protein ID WP_000554758.1
Coordinates 288108..288401 (+) Length 98 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BSG21_RS01355 283740..284237 + 498 WP_000006255.1 REP-associated tyrosine transposase RayT -
BSG21_RS01365 284461..286173 - 1713 Protein_248 flagellar biosynthesis protein FlhA -
BSG21_RS01370 286145..286930 + 786 WP_000207552.1 putative lateral flagellar export/assembly protein LafU -
BSG21_RS01375 287001..288056 + 1056 WP_001226164.1 DNA polymerase IV -
BSG21_RS01380 288108..288401 + 294 WP_000554758.1 type I toxin-antitoxin system antitoxin YafN Antitoxin
BSG21_RS01385 288404..288802 + 399 WP_001263489.1 type II toxin-antitoxin system mRNA interferase toxin YafO Toxin
BSG21_RS01390 288812..289264 + 453 WP_001059892.1 GNAT family N-acetyltransferase -
BSG21_RS01400 289582..289788 + 207 Protein_254 RtcB family protein -
BSG21_RS01405 289784..290305 + 522 Protein_255 peptide chain release factor H -
BSG21_RS01410 290362..291819 - 1458 WP_001292994.1 cytosol nonspecific dipeptidase -
BSG21_RS01415 292080..292538 + 459 WP_001291990.1 xanthine phosphoribosyltransferase -
- 293134..293214 + 81 NuclAT_11 - -
- 293134..293214 + 81 NuclAT_11 - -
- 293134..293214 + 81 NuclAT_11 - -
- 293134..293214 + 81 NuclAT_11 - -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - gmhA/lpcA 273021..307090 34069


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(27-130)

Antitoxin


No domain identified.



Sequences


Toxin        


Download         Length: 133 a.a.        Molecular weight: 15487.84 Da        Isoelectric Point: 7.4215

>T68729 WP_001263489.1 NZ_CP018109:288404-288802 [Escherichia coli]
MRVFKTKLIRLQLTAEELDALTADFISYKRDGVLPDIFGRDALYDDSFTWPLIKFERVAHIHLANENNPFPPQLRQFSRT
NDEAHLVYCQGAFDEQAWLLIAILKPEPHKLARDNNQMHKIGKMAEAFRMRF

Download         Length: 399 bp

>T68729 NZ_CP018109:288404-288802 [Escherichia coli]
ATGCGGGTATTCAAAACAAAACTTATTCGCCTGCAACTTACAGCAGAGGAACTTGATGCGTTAACGGCGGATTTTATTTC
CTATAAGCGTGACGGTGTTTTGCCAGATATATTTGGTCGCGATGCACTCTACGACGACTCCTTTACCTGGCCATTAATCA
AATTTGAGCGAGTTGCTCATATTCATCTGGCAAATGAGAATAATCCATTTCCGCCACAGTTGCGCCAATTCAGCAGAACG
AATGACGAAGCGCATTTGGTATATTGTCAGGGGGCGTTTGATGAGCAAGCATGGTTGCTCATTGCCATTCTGAAACCTGA
ACCTCATAAACTGGCTCGAGATAACAACCAAATGCATAAAATTGGGAAAATGGCAGAAGCGTTTCGCATGCGTTTTTGA

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 11233.76 Da        Isoelectric Point: 5.2170

>AT68729 WP_000554758.1 NZ_CP018109:288108-288401 [Escherichia coli]
MHRILAEKSVNITELRKNPAKYFIDQPVAVLSNNRPAGYLLSASAFEALMDMLAEQEEKKPIKARFRPSAARLEEITRRA
EQYLNDMTDDDFNDFKE

Download         Length: 294 bp

>AT68729 NZ_CP018109:288108-288401 [Escherichia coli]
ATGCATCGAATTCTCGCTGAAAAATCGGTCAATATCACTGAGTTACGTAAAAACCCAGCTAAATACTTTATTGATCAACC
GGTTGCGGTTCTTTCTAATAATCGCCCCGCAGGATATCTCTTAAGTGCCAGCGCATTCGAAGCGTTAATGGACATGCTTG
CTGAACAAGAGGAGAAAAAGCCCATAAAGGCGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCT
GAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB A0A090J8B1


Antitoxin

Source ID Structure
AlphaFold DB S1QAE3

References