Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-YefM |
Location | 3986969..3987474 | Replicon | chromosome |
Accession | NZ_CP017886 | ||
Organism | Pseudomonas frederiksbergensis strain ERDD5:01 |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | A0A1J0EPA2 |
Locus tag | BLL42_RS19145 | Protein ID | WP_071553477.1 |
Coordinates | 3986969..3987223 (-) | Length | 85 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | A0A1J0ENM7 |
Locus tag | BLL42_RS19150 | Protein ID | WP_071553478.1 |
Coordinates | 3987220..3987474 (-) | Length | 85 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
BLL42_RS19120 | 3982149..3982856 | + | 708 | WP_071553472.1 | peptide-methionine (S)-S-oxide reductase MsrA | - |
BLL42_RS19125 | 3982875..3983372 | - | 498 | WP_071553473.1 | GNAT family N-acetyltransferase | - |
BLL42_RS19130 | 3983497..3984510 | - | 1014 | WP_071553474.1 | sensor domain-containing diguanylate cyclase | - |
BLL42_RS19135 | 3984642..3985550 | - | 909 | WP_071553475.1 | LysR family transcriptional regulator | - |
BLL42_RS19140 | 3985653..3986834 | + | 1182 | WP_071553476.1 | aspartate aminotransferase family protein | - |
BLL42_RS19145 | 3986969..3987223 | - | 255 | WP_071553477.1 | Txe/YoeB family addiction module toxin | Toxin |
BLL42_RS19150 | 3987220..3987474 | - | 255 | WP_071553478.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
BLL42_RS19155 | 3987664..3988242 | - | 579 | WP_071553479.1 | DedA family protein | - |
BLL42_RS19160 | 3988326..3988778 | - | 453 | WP_071553480.1 | VOC family protein | - |
BLL42_RS19165 | 3988807..3989136 | - | 330 | WP_071553481.1 | hypothetical protein | - |
BLL42_RS19170 | 3989126..3989917 | - | 792 | WP_071553482.1 | VacJ family lipoprotein | - |
BLL42_RS19175 | 3990085..3990795 | + | 711 | WP_071555797.1 | response regulator | - |
BLL42_RS19180 | 3990804..3992147 | + | 1344 | WP_071553483.1 | HAMP domain-containing protein | - |
BLL42_RS19185 | 3992239..3992460 | - | 222 | WP_071553484.1 | formate dehydrogenase subunit delta | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 9933.50 Da Isoelectric Point: 9.5036
>T68262 WP_071553477.1 NZ_CP017886:c3987223-3986969 [Pseudomonas frederiksbergensis]
MNILFTPEGWDDYLWFQQNDKAGLKRINLLIKATLRDPFAGPGKPEPLKHNLSGFWSRRITAEHRLVYTVEGEKLQIVMC
RYHY
MNILFTPEGWDDYLWFQQNDKAGLKRINLLIKATLRDPFAGPGKPEPLKHNLSGFWSRRITAEHRLVYTVEGEKLQIVMC
RYHY
Download Length: 255 bp
>T68262 NZ_CP017886:c3987223-3986969 [Pseudomonas frederiksbergensis]
ATGAACATTCTGTTCACCCCCGAAGGCTGGGACGACTACCTCTGGTTTCAGCAGAACGATAAAGCCGGGCTCAAACGGAT
CAACCTGCTGATCAAGGCAACCCTGCGGGATCCGTTCGCAGGCCCTGGAAAGCCAGAGCCACTCAAACATAACCTTAGCG
GTTTTTGGTCCCGCAGGATCACTGCTGAGCATCGTCTGGTCTACACAGTAGAAGGTGAAAAACTACAGATCGTGATGTGC
AGATACCACTACTGA
ATGAACATTCTGTTCACCCCCGAAGGCTGGGACGACTACCTCTGGTTTCAGCAGAACGATAAAGCCGGGCTCAAACGGAT
CAACCTGCTGATCAAGGCAACCCTGCGGGATCCGTTCGCAGGCCCTGGAAAGCCAGAGCCACTCAAACATAACCTTAGCG
GTTTTTGGTCCCGCAGGATCACTGCTGAGCATCGTCTGGTCTACACAGTAGAAGGTGAAAAACTACAGATCGTGATGTGC
AGATACCACTACTGA
Antitoxin
Download Length: 85 a.a. Molecular weight: 9538.97 Da Isoelectric Point: 8.5163
>AT68262 WP_071553478.1 NZ_CP017886:c3987474-3987220 [Pseudomonas frederiksbergensis]
MQTINYTNARAHLSETMDRVNEDRAPLLVTRQKGEPVVMISLAEYNALEETAYLLRTPANAERLIKSINSLRAGKTKPRL
LIEE
MQTINYTNARAHLSETMDRVNEDRAPLLVTRQKGEPVVMISLAEYNALEETAYLLRTPANAERLIKSINSLRAGKTKPRL
LIEE
Download Length: 255 bp
>AT68262 NZ_CP017886:c3987474-3987220 [Pseudomonas frederiksbergensis]
ATGCAAACCATTAATTACACCAATGCCCGGGCACACCTTTCCGAGACTATGGATCGAGTCAATGAAGACCGCGCCCCTCT
GTTGGTAACCCGGCAAAAAGGGGAACCGGTGGTGATGATTTCCCTTGCCGAATACAACGCCCTCGAAGAAACCGCCTACT
TGCTCCGTACTCCGGCCAACGCCGAGCGTCTGATCAAGTCGATCAACAGCCTGCGTGCGGGGAAAACCAAGCCAAGGCTG
CTCATTGAAGAATGA
ATGCAAACCATTAATTACACCAATGCCCGGGCACACCTTTCCGAGACTATGGATCGAGTCAATGAAGACCGCGCCCCTCT
GTTGGTAACCCGGCAAAAAGGGGAACCGGTGGTGATGATTTCCCTTGCCGAATACAACGCCCTCGAAGAAACCGCCTACT
TGCTCCGTACTCCGGCCAACGCCGAGCGTCTGATCAAGTCGATCAACAGCCTGCGTGCGGGGAAAACCAAGCCAAGGCTG
CTCATTGAAGAATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1J0EPA2 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1J0ENM7 |