Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | I | Classification (family/domain) | symER/SymE(toxin) |
Location | 5259616..5260028 | Replicon | chromosome |
Accession | NZ_CP017669 | ||
Organism | Escherichia coli strain PA20 |
Toxin (Protein)
Gene name | symE | Uniprot ID | Q8FA88 |
Locus tag | AU473_RS27110 | Protein ID | WP_000132630.1 |
Coordinates | 5259687..5260028 (+) | Length | 114 a.a. |
Antitoxin (RNA)
Gene name | symR | ||
Locus tag | - | ||
Coordinates | 5259616..5259692 (-) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
AU473_RS27100 | 5256243..5257712 | + | 1470 | WP_001302468.1 | type I restriction-modification system subunit M | - |
AU473_RS27105 | 5257712..5259466 | + | 1755 | WP_000110082.1 | restriction endonuclease subunit S | - |
- | 5259616..5259692 | - | 77 | NuclAT_15 | - | Antitoxin |
- | 5259616..5259692 | - | 77 | NuclAT_15 | - | Antitoxin |
- | 5259616..5259692 | - | 77 | NuclAT_15 | - | Antitoxin |
- | 5259616..5259692 | - | 77 | NuclAT_15 | - | Antitoxin |
- | 5259616..5259692 | - | 77 | NuclAT_16 | - | Antitoxin |
- | 5259616..5259692 | - | 77 | NuclAT_16 | - | Antitoxin |
- | 5259616..5259692 | - | 77 | NuclAT_16 | - | Antitoxin |
- | 5259616..5259692 | - | 77 | NuclAT_16 | - | Antitoxin |
AU473_RS27110 | 5259687..5260028 | + | 342 | WP_000132630.1 | endoribonuclease SymE | Toxin |
AU473_RS31130 | 5260075..5261238 | - | 1164 | WP_001304006.1 | DUF1524 domain-containing protein | - |
AU473_RS27120 | 5261286..5262167 | - | 882 | WP_001304007.1 | DUF262 domain-containing protein | - |
AU473_RS27125 | 5262264..5262428 | - | 165 | WP_000394274.1 | DUF1127 domain-containing protein | - |
AU473_RS27130 | 5262605..5264017 | + | 1413 | WP_000199295.1 | PLP-dependent aminotransferase family protein | - |
AU473_RS32520 | 5264260..5264460 | - | 201 | WP_001310455.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
inside | Genomic island | - | espX6 | 5251815..5273042 | 21227 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 114 a.a. Molecular weight: 12294.13 Da Isoelectric Point: 8.4982
>T67961 WP_000132630.1 NZ_CP017669:5259687-5260028 [Escherichia coli]
MTDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAITLKGQWLEAAGFATGTVVDVKVMEGCIVLTAQPPAAAESE
LMQSLRQVCKLSARKQRQVQEFIGVIAGKQKVA
MTDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAITLKGQWLEAAGFATGTVVDVKVMEGCIVLTAQPPAAAESE
LMQSLRQVCKLSARKQRQVQEFIGVIAGKQKVA
Download Length: 342 bp
>T67961 NZ_CP017669:5259687-5260028 [Escherichia coli]
ATGACTGATACGCATTCTATTGCACAACCGTTCGAAGCAGAAGTCTCCCCGGCAAATAACCGTCAATTAACCGTGAGTTA
TGCGAGTCGTTACCCGGATTACAGCCGTATTCCCGCCATCACCCTGAAAGGTCAGTGGCTGGAAGCCGCCGGTTTTGCCA
CCGGCACGGTGGTAGATGTCAAAGTGATGGAAGGCTGTATTGTCCTCACCGCCCAACCACCCGCCGCCGCCGAGAGCGAA
CTGATGCAGTCGCTGCGCCAGGTGTGCAAGCTGTCGGCGCGTAAACAAAGGCAGGTGCAGGAGTTTATTGGGGTGATTGC
GGGTAAACAGAAAGTTGCCTGA
ATGACTGATACGCATTCTATTGCACAACCGTTCGAAGCAGAAGTCTCCCCGGCAAATAACCGTCAATTAACCGTGAGTTA
TGCGAGTCGTTACCCGGATTACAGCCGTATTCCCGCCATCACCCTGAAAGGTCAGTGGCTGGAAGCCGCCGGTTTTGCCA
CCGGCACGGTGGTAGATGTCAAAGTGATGGAAGGCTGTATTGTCCTCACCGCCCAACCACCCGCCGCCGCCGAGAGCGAA
CTGATGCAGTCGCTGCGCCAGGTGTGCAAGCTGTCGGCGCGTAAACAAAGGCAGGTGCAGGAGTTTATTGGGGTGATTGC
GGGTAAACAGAAAGTTGCCTGA
Antitoxin
Download Length: 77 bp
>AT67961 NZ_CP017669:c5259692-5259616 [Escherichia coli]
AGTCATAACTGCTATTCCCTATAAATAGTGATTGTGATTAGCGGTGCGGGTGTGTTGGCGCACATCCGCACCGCGCT
AGTCATAACTGCTATTCCCTATAAATAGTGATTGTGATTAGCGGTGCGGGTGTGTTGGCGCACATCCGCACCGCGCT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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