Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | unclassified/- |
Location | 3001515..3002163 | Replicon | chromosome |
Accession | NZ_CP017597 | ||
Organism | Mycobacterium tuberculosis strain Beijing-like/50148 |
Toxin (Protein)
Gene name | novel[antitoxin] | Uniprot ID | P9WJ12 |
Locus tag | BJM03_RS14665 | Protein ID | WP_003899414.1 |
Coordinates | 3001515..3001838 (-) | Length | 108 a.a. |
Antitoxin (Protein)
Gene name | novel[toxin] | Uniprot ID | P9WJ10 |
Locus tag | BJM03_RS14670 | Protein ID | WP_003899415.1 |
Coordinates | 3001918..3002163 (-) | Length | 82 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
BJM03_RS14635 | 2996838..2997836 | + | 999 | WP_003900538.1 | tyrosine-type recombinase/integrase | - |
BJM03_RS14640 | 2997850..2998314 | + | 465 | WP_003900539.1 | ParB N-terminal domain-containing protein | - |
BJM03_RS14645 | 2998302..2998553 | + | 252 | WP_003908028.1 | hypothetical protein | - |
BJM03_RS14650 | 2998724..3000163 | - | 1440 | WP_003901443.1 | phage major capsid protein | - |
BJM03_RS14655 | 3000171..3000704 | - | 534 | WP_003899412.1 | HK97 family phage prohead protease | - |
BJM03_RS14660 | 3000857..3001348 | - | 492 | WP_003900541.1 | phage terminase small subunit P27 family | - |
BJM03_RS14665 | 3001515..3001838 | - | 324 | WP_003899414.1 | type II toxin-antitoxin system toxin | Toxin |
BJM03_RS14670 | 3001918..3002163 | - | 246 | WP_003899415.1 | type II toxin-antitoxin system antitoxin | Antitoxin |
BJM03_RS14675 | 3002160..3003587 | - | 1428 | WP_003899416.1 | DUF3631 domain-containing protein | - |
BJM03_RS14680 | 3003589..3003981 | - | 393 | WP_003899417.1 | DUF2742 domain-containing protein | - |
BJM03_RS14685 | 3003978..3004238 | - | 261 | WP_003899418.1 | helix-turn-helix domain-containing protein | - |
BJM03_RS14690 | 3004255..3004617 | - | 363 | WP_003900543.1 | hypothetical protein | - |
BJM03_RS14695 | 3004620..3005747 | - | 1128 | WP_003899420.1 | site-specific integrase | - |
BJM03_RS14700 | 3005892..3006119 | - | 228 | WP_003899421.1 | hypothetical protein | - |
BJM03_RS14705 | 3006116..3006505 | - | 390 | WP_003899422.1 | hypothetical protein | - |
BJM03_RS14710 | 3006411..3006683 | + | 273 | WP_003900544.1 | hypothetical protein | - |
BJM03_RS14715 | 3006782..3007015 | + | 234 | WP_003413717.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
inside | Prophage | - | - | 2996838..3005747 | 8909 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 108 a.a. Molecular weight: 12359.82 Da Isoelectric Point: 8.6717
>T67725 WP_003899414.1 NZ_CP017597:c3001838-3001515 [Mycobacterium tuberculosis]
MTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLD
DEQRRLEAGMKLGWHPYHFPDEPDSKQ
MTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLD
DEQRRLEAGMKLGWHPYHFPDEPDSKQ
Download Length: 324 bp
>T67725 NZ_CP017597:c3001838-3001515 [Mycobacterium tuberculosis]
TTGACCCACAAGCGCACTAAACGCCAGCCAGCCATCGCCGCAGGGCTCAACGCCCCGCGTCGGAATCGCGTTGGGCGGCA
ACATGGTTGGCCGGCCGACGTTCCGTCCGCCGAGCAGCGCCGCGCCCAACGGCAGCGCGACCTCGAGGCTATCCGCCGAG
CGTACGCCGAGATGGTGGCGACATCACACGAAATCGACGACGACACAGCCGAACTGGCGCTGTTGTCGATGCATCTCGAC
GATGAGCAGCGCCGGCTTGAGGCGGGGATGAAGCTCGGCTGGCATCCGTATCACTTCCCCGACGAACCCGACAGCAAACA
GTGA
TTGACCCACAAGCGCACTAAACGCCAGCCAGCCATCGCCGCAGGGCTCAACGCCCCGCGTCGGAATCGCGTTGGGCGGCA
ACATGGTTGGCCGGCCGACGTTCCGTCCGCCGAGCAGCGCCGCGCCCAACGGCAGCGCGACCTCGAGGCTATCCGCCGAG
CGTACGCCGAGATGGTGGCGACATCACACGAAATCGACGACGACACAGCCGAACTGGCGCTGTTGTCGATGCATCTCGAC
GATGAGCAGCGCCGGCTTGAGGCGGGGATGAAGCTCGGCTGGCATCCGTATCACTTCCCCGACGAACCCGACAGCAAACA
GTGA
Antitoxin
Download Length: 82 a.a. Molecular weight: 7697.71 Da Isoelectric Point: 4.8565
>AT67725 WP_003899415.1 NZ_CP017597:c3002163-3001918 [Mycobacterium tuberculosis]
MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGVAAVLFAATAAAAAAVDRGDP
P
MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGVAAVLFAATAAAAAAVDRGDP
P
Download Length: 246 bp
>AT67725 NZ_CP017597:c3002163-3001918 [Mycobacterium tuberculosis]
ATGAGCGGCCACGCGTTGGCTGCTCGGACGTTGCTGGCCGCCGCGGACGAGCTTGTCGGCGGCCCGCCAGTCGAGGCTTC
GGCCGCCGCGCTGGCCGGCGACGCCGCGGGCGCATGGCGGACCGCGGCCGTCGAGCTTGCGCGAGCGTTGGTCCGCGCTG
TGGCGGAGTCGCACGGCGTCGCGGCCGTTTTGTTCGCCGCGACGGCCGCCGCGGCGGCGGCCGTCGACCGGGGTGATCCG
CCGTGA
ATGAGCGGCCACGCGTTGGCTGCTCGGACGTTGCTGGCCGCCGCGGACGAGCTTGTCGGCGGCCCGCCAGTCGAGGCTTC
GGCCGCCGCGCTGGCCGGCGACGCCGCGGGCGCATGGCGGACCGCGGCCGTCGAGCTTGCGCGAGCGTTGGTCCGCGCTG
TGGCGGAGTCGCACGGCGTCGCGGCCGTTTTGTTCGCCGCGACGGCCGCCGCGGCGGCGGCCGTCGACCGGGGTGATCCG
CCGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A045IHC4 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A806JR81 |