Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/RelE-HTH |
Location | 652422..653026 | Replicon | chromosome |
Accession | NZ_CP017296 | ||
Organism | Pseudomonas fluorescens strain Pt14 |
Toxin (Protein)
Gene name | higB | Uniprot ID | - |
Locus tag | BH711_RS02985 | Protein ID | WP_038449428.1 |
Coordinates | 652712..653026 (-) | Length | 105 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | - |
Locus tag | BH711_RS02980 | Protein ID | WP_014717446.1 |
Coordinates | 652422..652709 (-) | Length | 96 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
BH711_RS02945 | 647926..648684 | + | 759 | WP_014717370.1 | MBL fold metallo-hydrolase | - |
BH711_RS02950 | 648712..649425 | + | 714 | WP_005786030.1 | phosphoribosylaminoimidazolesuccinocarboxamide synthase | - |
BH711_RS02960 | 649694..649987 | - | 294 | WP_038449426.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
BH711_RS02965 | 649977..650216 | - | 240 | WP_014717442.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
BH711_RS02970 | 650623..650877 | + | 255 | WP_032903173.1 | hypothetical protein | - |
BH711_RS02975 | 650951..652177 | - | 1227 | WP_014717445.1 | MFS transporter | - |
BH711_RS02980 | 652422..652709 | - | 288 | WP_014717446.1 | helix-turn-helix domain-containing protein | Antitoxin |
BH711_RS02985 | 652712..653026 | - | 315 | WP_038449428.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
BH711_RS02990 | 653133..654074 | - | 942 | WP_014717448.1 | LysR family transcriptional regulator | - |
BH711_RS02995 | 654232..655548 | + | 1317 | WP_014717449.1 | MHS family MFS transporter | - |
BH711_RS03000 | 655560..656792 | + | 1233 | WP_038449430.1 | Zn-dependent hydrolase | - |
BH711_RS03005 | 656858..657910 | + | 1053 | WP_038449432.1 | histone deacetylase family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 105 a.a. Molecular weight: 11647.39 Da Isoelectric Point: 10.0575
>T66437 WP_038449428.1 NZ_CP017296:c653026-652712 [Pseudomonas fluorescens]
MIFIETSVFTRRVKELINEDAYTAFQNVLVANPAAGDVIEGTGGIRKIRVAAKSHGKRGGARVIYYHFASASQIVLLMIY
PKNEQQDLSADERKSLKAAIEHWR
MIFIETSVFTRRVKELINEDAYTAFQNVLVANPAAGDVIEGTGGIRKIRVAAKSHGKRGGARVIYYHFASASQIVLLMIY
PKNEQQDLSADERKSLKAAIEHWR
Download Length: 315 bp
>T66437 NZ_CP017296:c653026-652712 [Pseudomonas fluorescens]
ATGATTTTCATTGAGACATCGGTCTTCACACGTCGCGTTAAAGAATTGATCAACGAAGATGCCTACACGGCCTTTCAGAA
CGTGCTTGTAGCGAATCCCGCTGCAGGCGATGTGATTGAGGGTACGGGCGGTATCCGCAAAATACGAGTAGCAGCCAAGA
GCCATGGTAAACGAGGCGGGGCACGTGTGATCTATTACCACTTCGCCTCGGCATCACAGATTGTTTTACTGATGATCTAT
CCCAAAAATGAACAGCAGGACTTGAGCGCCGACGAACGCAAGTCACTGAAGGCTGCGATTGAGCACTGGAGATAG
ATGATTTTCATTGAGACATCGGTCTTCACACGTCGCGTTAAAGAATTGATCAACGAAGATGCCTACACGGCCTTTCAGAA
CGTGCTTGTAGCGAATCCCGCTGCAGGCGATGTGATTGAGGGTACGGGCGGTATCCGCAAAATACGAGTAGCAGCCAAGA
GCCATGGTAAACGAGGCGGGGCACGTGTGATCTATTACCACTTCGCCTCGGCATCACAGATTGTTTTACTGATGATCTAT
CCCAAAAATGAACAGCAGGACTTGAGCGCCGACGAACGCAAGTCACTGAAGGCTGCGATTGAGCACTGGAGATAG
Antitoxin
Download Length: 96 a.a. Molecular weight: 10794.39 Da Isoelectric Point: 7.3219
>AT66437 WP_014717446.1 NZ_CP017296:c652709-652422 [Pseudomonas fluorescens]
MSRLFDELMESVQEMNEILRGEREPSREFHVDSMRVKEIRKATGLTQAKFAALIDVQLGTLRNWEQGRREPTGPAKALLK
AIHNDPVHVLNALAS
MSRLFDELMESVQEMNEILRGEREPSREFHVDSMRVKEIRKATGLTQAKFAALIDVQLGTLRNWEQGRREPTGPAKALLK
AIHNDPVHVLNALAS
Download Length: 288 bp
>AT66437 NZ_CP017296:c652709-652422 [Pseudomonas fluorescens]
ATGAGCCGACTTTTTGATGAATTGATGGAAAGCGTTCAAGAGATGAACGAGATCCTGCGCGGAGAACGGGAGCCATCCCG
TGAATTTCATGTCGACTCAATGCGAGTTAAAGAGATCCGTAAGGCAACAGGGCTGACCCAGGCTAAATTCGCAGCGCTGA
TTGACGTTCAGCTCGGTACGTTGCGCAACTGGGAGCAGGGTCGTCGCGAACCTACTGGGCCGGCAAAGGCGTTGTTGAAA
GCTATCCATAACGACCCGGTACATGTACTGAACGCGCTGGCTAGCTAA
ATGAGCCGACTTTTTGATGAATTGATGGAAAGCGTTCAAGAGATGAACGAGATCCTGCGCGGAGAACGGGAGCCATCCCG
TGAATTTCATGTCGACTCAATGCGAGTTAAAGAGATCCGTAAGGCAACAGGGCTGACCCAGGCTAAATTCGCAGCGCTGA
TTGACGTTCAGCTCGGTACGTTGCGCAACTGGGAGCAGGGTCGTCGCGAACCTACTGGGCCGGCAAAGGCGTTGTTGAAA
GCTATCCATAACGACCCGGTACATGTACTGAACGCGCTGGCTAGCTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|
Antitoxin
Source | ID | Structure |
---|