Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 5610655..5611250 Replicon chromosome
Accession NZ_CP017099
Organism Pseudomonas aeruginosa strain DN1

Toxin (Protein)


Gene name higB Uniprot ID V6ALY3
Locus tag BG483_RS26990 Protein ID WP_003113526.1
Coordinates 5610972..5611250 (-) Length 93 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID A0A0S3KUN4
Locus tag BG483_RS26985 Protein ID WP_003111575.1
Coordinates 5610655..5610960 (-) Length 102 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BG483_RS26950 5605807..5606655 + 849 WP_009878189.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase -
BG483_RS26960 5606822..5607763 + 942 WP_003099281.1 ribose-phosphate pyrophosphokinase -
BG483_RS26965 5607880..5608494 + 615 WP_003095013.1 50S ribosomal protein L25/general stress protein Ctc -
BG483_RS26970 5608535..5609119 + 585 WP_003099278.1 aminoacyl-tRNA hydrolase -
BG483_RS26975 5609160..5610260 + 1101 WP_003099270.1 redox-regulated ATPase YchF -
BG483_RS26985 5610655..5610960 - 306 WP_003111575.1 HigA family addiction module antidote protein Antitoxin
BG483_RS26990 5610972..5611250 - 279 WP_003113526.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
BG483_RS27000 5611579..5613807 + 2229 WP_021264080.1 TonB-dependent receptor -
BG483_RS27005 5613877..5614524 - 648 WP_003095021.1 carbonate dehydratase -
BG483_RS27010 5614586..5615824 - 1239 WP_003111578.1 C69 family dipeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-1

(5-92)

Antitoxin

Toxin-antitoxin system, antidote protein, HigA

(6-82)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10646.19 Da        Isoelectric Point: 7.8937

>T65961 WP_003113526.1 NZ_CP017099:c5611250-5610972 [Pseudomonas aeruginosa]
MILTFRCDETRQLFETGLSRRWGAILTVATRKLAMLHAATELRDLRSPPGNRLEPLQGKRAGQHSIRINDQWRVCFVWTD
AGPEEVEIVDYH

Download         Length: 279 bp

>T65961 NZ_CP017099:c5611250-5610972 [Pseudomonas aeruginosa]
ATGATTCTGACCTTTCGCTGCGACGAGACTCGTCAGCTTTTTGAGACGGGTCTTTCGAGGCGGTGGGGAGCGATCCTCAC
AGTCGCTACGCGTAAGCTCGCAATGCTTCATGCGGCTACGGAGCTTCGAGACTTGCGCTCTCCACCTGGAAACCGGTTGG
AGCCGTTGCAGGGAAAGCGGGCGGGCCAACATAGCATCAGGATCAATGACCAGTGGCGTGTCTGTTTCGTCTGGACGGAT
GCGGGTCCCGAAGAAGTCGAAATAGTTGATTACCACTGA

Antitoxin


Download         Length: 102 a.a.        Molecular weight: 11205.72 Da        Isoelectric Point: 4.4475

>AT65961 WP_003111575.1 NZ_CP017099:c5610960-5610655 [Pseudomonas aeruginosa]
MATNGMRPIHPGEILRDEFLMELDISPAALARALKVSAPTVNDIVREQRGISADMAIRLGRYFDTSAQFWMNLQSEYSLA
TAYAANGEQIEHEIEPLLAQG

Download         Length: 306 bp

>AT65961 NZ_CP017099:c5610960-5610655 [Pseudomonas aeruginosa]
ATGGCTACCAATGGTATGCGCCCCATCCATCCTGGGGAAATATTGCGCGATGAGTTTCTGATGGAGTTGGATATCTCTCC
AGCTGCTCTAGCACGCGCTTTGAAAGTCTCCGCTCCGACAGTGAACGATATCGTTCGTGAGCAGCGTGGTATCTCCGCAG
ATATGGCGATTCGTCTGGGGCGTTACTTTGATACGTCCGCTCAGTTCTGGATGAATCTCCAGAGTGAGTATTCGTTAGCA
ACTGCTTATGCGGCGAATGGCGAGCAGATCGAACATGAGATTGAGCCGCTGCTTGCTCAGGGATAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB V6ALY3

Antitoxin

Source ID Structure
AlphaFold DB A0A0S3KUN4

References