Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | mqsRA (relBE)/MqsR-MqsA |
| Location | 3683742..3684466 | Replicon | chromosome |
| Accession | NZ_CP016944 | ||
| Organism | Yersinia enterocolitica strain YE3 | ||
Toxin (Protein)
| Gene name | mqsR | Uniprot ID | A0A7U7FJ92 |
| Locus tag | BED35_RS18150 | Protein ID | WP_005166025.1 |
| Coordinates | 3684170..3684466 (-) | Length | 99 a.a. |
Antitoxin (Protein)
| Gene name | mqsA | Uniprot ID | A0A7U7IZK5 |
| Locus tag | BED35_RS18145 | Protein ID | WP_049527936.1 |
| Coordinates | 3683742..3684170 (-) | Length | 143 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BED35_RS18120 | 3679061..3680305 | - | 1245 | WP_049527926.1 | sensor domain-containing diguanylate cyclase | - |
| BED35_RS18125 | 3680388..3680783 | - | 396 | WP_005166615.1 | SgcJ/EcaC family oxidoreductase | - |
| BED35_RS18130 | 3681155..3682102 | - | 948 | Protein_3376 | Fic family protein | - |
| BED35_RS18135 | 3682120..3682320 | + | 201 | WP_049527931.1 | AlpA family transcriptional regulator | - |
| BED35_RS18140 | 3682463..3683665 | + | 1203 | WP_049527934.1 | IS256 family transposase | - |
| BED35_RS18145 | 3683742..3684170 | - | 429 | WP_049527936.1 | type II toxin-antitoxin system MqsA family antitoxin | Antitoxin |
| BED35_RS18150 | 3684170..3684466 | - | 297 | WP_005166025.1 | type II toxin-antitoxin system MqsR family toxin | Toxin |
| BED35_RS18155 | 3684623..3684985 | - | 363 | WP_005166026.1 | helix-turn-helix domain-containing protein | - |
| BED35_RS18160 | 3685051..3685311 | - | 261 | WP_005166028.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| BED35_RS18165 | 3685808..3686839 | - | 1032 | Protein_3383 | IS630 family transposase | - |
| BED35_RS18170 | 3687395..3688615 | + | 1221 | WP_049527941.1 | tyrosine-type recombinase/integrase | - |
| BED35_RS18175 | 3688691..3689065 | - | 375 | WP_049527943.1 | hypothetical protein | - |
| BED35_RS18180 | 3689062..3689271 | - | 210 | WP_049527946.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | IScluster/Tn | - | - | 3677623..3686839 | 9216 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 11322.18 Da Isoelectric Point: 7.7766
>T65594 WP_005166025.1 NZ_CP016944:c3684466-3684170 [Yersinia enterocolitica]
MEKRTPHTRLLKVKELVLKGNVKSTRTARDGAEELGLSFRDMCDVVCELTSADFYKSMTTHQDHTIWQDVYRPMLSCGRV
YLKITVIDDVLIVSFKEL
MEKRTPHTRLLKVKELVLKGNVKSTRTARDGAEELGLSFRDMCDVVCELTSADFYKSMTTHQDHTIWQDVYRPMLSCGRV
YLKITVIDDVLIVSFKEL
Download Length: 297 bp
>T65594 NZ_CP016944:c3684466-3684170 [Yersinia enterocolitica]
ATGGAGAAACGGACTCCGCATACTCGTTTACTAAAAGTAAAAGAATTGGTATTGAAAGGGAATGTTAAATCGACTCGAAC
TGCCAGAGATGGCGCTGAAGAGCTGGGGCTGAGTTTTAGGGATATGTGTGATGTAGTTTGCGAACTGACTAGCGCCGATT
TTTATAAAAGTATGACGACACATCAAGATCATACGATTTGGCAGGATGTTTACCGCCCCATGCTTTCGTGCGGTAGAGTT
TATTTGAAAATCACGGTTATCGATGATGTTTTGATTGTCTCGTTTAAGGAGCTTTAA
ATGGAGAAACGGACTCCGCATACTCGTTTACTAAAAGTAAAAGAATTGGTATTGAAAGGGAATGTTAAATCGACTCGAAC
TGCCAGAGATGGCGCTGAAGAGCTGGGGCTGAGTTTTAGGGATATGTGTGATGTAGTTTGCGAACTGACTAGCGCCGATT
TTTATAAAAGTATGACGACACATCAAGATCATACGATTTGGCAGGATGTTTACCGCCCCATGCTTTCGTGCGGTAGAGTT
TATTTGAAAATCACGGTTATCGATGATGTTTTGATTGTCTCGTTTAAGGAGCTTTAA
Antitoxin
Download Length: 143 a.a. Molecular weight: 16029.82 Da Isoelectric Point: 9.1221
>AT65594 WP_049527936.1 NZ_CP016944:c3684170-3683742 [Yersinia enterocolitica]
MMKCPVCGGAELIHEARDVPFTYKGRKFIVEGVIGQHCPACGETIMTEAESDTYAAKTMLLRKMVNTESIAPAYIVQVRK
KLGLNQREASEIFGGGVNAFSRYEKGKALPHRSTIKLLQVLDKYPELLNEIRWLFGVRYFLM
MMKCPVCGGAELIHEARDVPFTYKGRKFIVEGVIGQHCPACGETIMTEAESDTYAAKTMLLRKMVNTESIAPAYIVQVRK
KLGLNQREASEIFGGGVNAFSRYEKGKALPHRSTIKLLQVLDKYPELLNEIRWLFGVRYFLM
Download Length: 429 bp
>AT65594 NZ_CP016944:c3684170-3683742 [Yersinia enterocolitica]
ATGATGAAATGCCCAGTTTGTGGTGGTGCAGAATTAATCCACGAAGCGCGTGACGTCCCCTTTACCTATAAAGGGCGTAA
GTTCATCGTCGAAGGCGTGATAGGACAACATTGCCCGGCATGCGGTGAAACAATCATGACTGAAGCTGAGTCCGATACCT
ATGCCGCAAAAACAATGCTTTTGCGAAAAATGGTTAATACAGAATCGATTGCACCCGCATATATTGTGCAGGTGCGAAAA
AAATTGGGTCTAAACCAGCGGGAAGCTAGTGAGATTTTTGGCGGTGGAGTGAATGCTTTTTCGCGTTACGAAAAGGGTAA
GGCGTTGCCACACCGATCAACGATAAAATTGTTGCAAGTGCTTGATAAATATCCTGAGTTATTGAATGAAATCAGGTGGT
TGTTTGGGGTAAGATACTTTTTAATGTGA
ATGATGAAATGCCCAGTTTGTGGTGGTGCAGAATTAATCCACGAAGCGCGTGACGTCCCCTTTACCTATAAAGGGCGTAA
GTTCATCGTCGAAGGCGTGATAGGACAACATTGCCCGGCATGCGGTGAAACAATCATGACTGAAGCTGAGTCCGATACCT
ATGCCGCAAAAACAATGCTTTTGCGAAAAATGGTTAATACAGAATCGATTGCACCCGCATATATTGTGCAGGTGCGAAAA
AAATTGGGTCTAAACCAGCGGGAAGCTAGTGAGATTTTTGGCGGTGGAGTGAATGCTTTTTCGCGTTACGAAAAGGGTAA
GGCGTTGCCACACCGATCAACGATAAAATTGTTGCAAGTGCTTGATAAATATCCTGAGTTATTGAATGAAATCAGGTGGT
TGTTTGGGGTAAGATACTTTTTAATGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A7U7FJ92 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A7U7IZK5 |