Detailed information of TA system TA065578

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): yefM-yoeB (relBE)/YoeB-YefM
• Location: 4125980..4126482
• Replicon: chromosome
• Accession: NZ_CP016940
• Organism: Yersinia enterocolitica strain YE5

Toxin (Protein)

• Gene name: yoeB
• Uniprot ID: -
• Locus tag: BED32_RS19480
• Protein ID: WP_049528435.1
• Coordinates: 4125980..4126234 (-)
• Length: 85 a.a.

Antitoxin (Protein)

• Gene name: yefM
• Uniprot ID: A0A7U7IZ70
• Locus tag: BED32_RS19485
• Protein ID: WP_049528437.1
• Coordinates: 4126231..4126482 (-)
• Length: 84 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
BED32_RS19470	4121070..4123202	-	2133	WP_069009560.1	TonB-dependent siderophore receptor	-
BED32_RS19475	4123621..4125956	+	2336	Protein_3738	mechanosensitive ion channel family protein	-
BED32_RS19480	4125980..4126234	-	255	WP_049528435.1	Txe/YoeB family addiction module toxin	Toxin
BED32_RS19485	4126231..4126482	-	252	WP_049528437.1	YoeB-YefM toxin-antitoxin system antitoxin YefM	Antitoxin
BED32_RS19490	4126613..4129398	-	2786	Protein_3741	insulinase family protein	-
BED32_RS19495	4129383..4131128	-	1746	WP_162489085.1	ABC transporter ATP-binding protein/permease	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin YoeB (2-84)

Antitoxin

• Type II toxin-antitoxin system, antitoxin Phd/YefM (1-74)

Sequences

Toxin

Protein

• Length: 85 a.a.
• Molecular weight: 10098.54 Da
• Isoelectric Point: 8.4816

>T65578 WP_049528435.1 NZ_CP016940:c4126234-4125980 [Yersinia enterocolitica]
VRIIFSSCSWEDYLYWQQTDKEILKRINELVKNIQRTPFEGKGKPEPLKHNLAGFWSRRITEEHRLVYEVSGDNLLIAAC
RYHY

Nucleotide

• Length: 255 bp

>T65578 NZ_CP016940:c4126234-4125980 [Yersinia enterocolitica]
GTGAGAATTATATTTTCCAGTTGTTCTTGGGAGGATTATCTTTATTGGCAACAAACGGATAAGGAAATCCTCAAACGCAT
TAATGAGTTAGTAAAAAATATTCAAAGAACGCCATTTGAGGGAAAGGGTAAACCGGAACCCCTTAAACATAATCTGGCAG
GGTTCTGGTCACGGAGGATTACAGAAGAGCACAGACTTGTTTATGAGGTTTCCGGTGATAATTTATTAATTGCTGCTTGT
CGTTACCATTATTGA

Antitoxin

Protein

• Length: 84 a.a.
• Molecular weight: 9463.66 Da
• Isoelectric Point: 4.4878

>AT65578 WP_049528437.1 NZ_CP016940:c4126482-4126231 [Yersinia enterocolitica]
MRTISYSEARQNLSTTMVQTVEDRAPILITRQNGTSCVLMSLEEYESLEETAYLLRSPSNAKHLMDSIEELRAGKGIQRE
LEE

Nucleotide

• Length: 252 bp

>AT65578 NZ_CP016940:c4126482-4126231 [Yersinia enterocolitica]
ATGAGAACAATTAGTTATAGTGAGGCGCGCCAGAATTTGTCGACAACGATGGTGCAAACGGTTGAGGATCGAGCCCCCAT
CCTCATCACTCGTCAAAATGGGACTTCTTGTGTTCTTATGTCACTTGAAGAATATGAATCATTGGAAGAAACTGCTTATT
TACTGCGCTCACCATCAAACGCGAAGCATTTGATGGACTCAATTGAAGAGTTGAGAGCAGGAAAAGGAATTCAAAGGGAA
CTTGAAGAGTGA

Structures

Antitoxin

• AlphaFold DB: A0A7U7IZ70