Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-YefM |
Location | 4193561..4194063 | Replicon | chromosome |
Accession | NZ_CP016935 | ||
Organism | Yersinia enterocolitica strain YE7 |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | - |
Locus tag | BED34_RS19875 | Protein ID | WP_049528435.1 |
Coordinates | 4193561..4193815 (-) | Length | 85 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | A0A7U7IZ70 |
Locus tag | BED34_RS19880 | Protein ID | WP_049528437.1 |
Coordinates | 4193812..4194063 (-) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
BED34_RS19865 | 4188651..4190783 | - | 2133 | WP_069009560.1 | TonB-dependent siderophore receptor | - |
BED34_RS19870 | 4191202..4193537 | + | 2336 | Protein_3804 | mechanosensitive ion channel family protein | - |
BED34_RS19875 | 4193561..4193815 | - | 255 | WP_049528435.1 | Txe/YoeB family addiction module toxin | Toxin |
BED34_RS19880 | 4193812..4194063 | - | 252 | WP_049528437.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin |
BED34_RS19885 | 4194194..4196979 | - | 2786 | Protein_3807 | insulinase family protein | - |
BED34_RS19890 | 4196964..4198709 | - | 1746 | WP_162489085.1 | ABC transporter ATP-binding protein/permease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 10098.54 Da Isoelectric Point: 8.4816
>T65538 WP_049528435.1 NZ_CP016935:c4193815-4193561 [Yersinia enterocolitica]
VRIIFSSCSWEDYLYWQQTDKEILKRINELVKNIQRTPFEGKGKPEPLKHNLAGFWSRRITEEHRLVYEVSGDNLLIAAC
RYHY
VRIIFSSCSWEDYLYWQQTDKEILKRINELVKNIQRTPFEGKGKPEPLKHNLAGFWSRRITEEHRLVYEVSGDNLLIAAC
RYHY
Download Length: 255 bp
>T65538 NZ_CP016935:c4193815-4193561 [Yersinia enterocolitica]
GTGAGAATTATATTTTCCAGTTGTTCTTGGGAGGATTATCTTTATTGGCAACAAACGGATAAGGAAATCCTCAAACGCAT
TAATGAGTTAGTAAAAAATATTCAAAGAACGCCATTTGAGGGAAAGGGTAAACCGGAACCCCTTAAACATAATCTGGCAG
GGTTCTGGTCACGGAGGATTACAGAAGAGCACAGACTTGTTTATGAGGTTTCCGGTGATAATTTATTAATTGCTGCTTGT
CGTTACCATTATTGA
GTGAGAATTATATTTTCCAGTTGTTCTTGGGAGGATTATCTTTATTGGCAACAAACGGATAAGGAAATCCTCAAACGCAT
TAATGAGTTAGTAAAAAATATTCAAAGAACGCCATTTGAGGGAAAGGGTAAACCGGAACCCCTTAAACATAATCTGGCAG
GGTTCTGGTCACGGAGGATTACAGAAGAGCACAGACTTGTTTATGAGGTTTCCGGTGATAATTTATTAATTGCTGCTTGT
CGTTACCATTATTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9463.66 Da Isoelectric Point: 4.4878
>AT65538 WP_049528437.1 NZ_CP016935:c4194063-4193812 [Yersinia enterocolitica]
MRTISYSEARQNLSTTMVQTVEDRAPILITRQNGTSCVLMSLEEYESLEETAYLLRSPSNAKHLMDSIEELRAGKGIQRE
LEE
MRTISYSEARQNLSTTMVQTVEDRAPILITRQNGTSCVLMSLEEYESLEETAYLLRSPSNAKHLMDSIEELRAGKGIQRE
LEE
Download Length: 252 bp
>AT65538 NZ_CP016935:c4194063-4193812 [Yersinia enterocolitica]
ATGAGAACAATTAGTTATAGTGAGGCGCGCCAGAATTTGTCGACAACGATGGTGCAAACGGTTGAGGATCGAGCCCCCAT
CCTCATCACTCGTCAAAATGGGACTTCTTGTGTTCTTATGTCACTTGAAGAATATGAATCATTGGAAGAAACTGCTTATT
TACTGCGCTCACCATCAAACGCGAAGCATTTGATGGACTCAATTGAAGAGTTGAGAGCAGGAAAAGGAATTCAAAGGGAA
CTTGAAGAGTGA
ATGAGAACAATTAGTTATAGTGAGGCGCGCCAGAATTTGTCGACAACGATGGTGCAAACGGTTGAGGATCGAGCCCCCAT
CCTCATCACTCGTCAAAATGGGACTTCTTGTGTTCTTATGTCACTTGAAGAATATGAATCATTGGAAGAAACTGCTTATT
TACTGCGCTCACCATCAAACGCGAAGCATTTGATGGACTCAATTGAAGAGTTGAGAGCAGGAAAAGGAATTCAAAGGGAA
CTTGAAGAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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