Detailed information of TA system TA064907

Bioinformatically predicted

Overview

TA module

• Type: I
• Classification (family/domain): ldrD-ohsC/Ldr(toxin)
• Location: 4708658..4708879
• Replicon: chromosome
• Accession: NZ_CP016625
• Organism: Escherichia coli O157:H7 strain FRIK944

Toxin (Protein)

• Gene name: ldrD
• Uniprot ID: S1NWX0
• Locus tag: A9L45_RS33960
• Protein ID: WP_001295224.1
• Coordinates: 4708658..4708765 (-)
• Length: 36 a.a.

Antitoxin (RNA)

Gene name	ohsC
Locus tag	-
Coordinates	4708814..4708879 (+)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
A9L45_RS24555	4703911..4704663	-	753	Protein_4707	cellulose biosynthesis protein BcsQ	-
A9L45_RS24565	4704675..4704863	-	189	WP_001063316.1	YhjR family protein	-
A9L45_RS24570	4705136..4706707	+	1572	WP_001204920.1	cellulose biosynthesis protein BcsE	-
A9L45_RS24575	4706704..4706895	+	192	WP_000988308.1	cellulose biosynthesis protein BcsF	-
A9L45_RS24580	4706892..4708571	+	1680	WP_000191592.1	cellulose biosynthesis protein BcsG	-
A9L45_RS33960	4708658..4708765	-	108	WP_001295224.1	type I toxin-antitoxin system toxin Ldr family protein	Toxin
-	4708814..4708879	+	66	NuclAT_16	-	Antitoxin
-	4708814..4708879	+	66	NuclAT_16	-	Antitoxin
-	4708814..4708879	+	66	NuclAT_16	-	Antitoxin
-	4708814..4708879	+	66	NuclAT_16	-	Antitoxin
-	4708814..4708879	+	66	NuclAT_21	-	Antitoxin
-	4708814..4708879	+	66	NuclAT_21	-	Antitoxin
-	4708814..4708879	+	66	NuclAT_21	-	Antitoxin
-	4708814..4708879	+	66	NuclAT_21	-	Antitoxin
A9L45_RS24595	4709241..4710512	+	1272	WP_001301684.1	amino acid permease	-
A9L45_RS24600	4710542..4711546	-	1005	WP_000107027.1	dipeptide ABC transporter ATP-binding subunit DppF	-
A9L45_RS24605	4711543..4712526	-	984	WP_001196486.1	dipeptide ABC transporter ATP-binding protein	-
A9L45_RS24610	4712537..4713439	-	903	WP_000084677.1	dipeptide ABC transporter permease DppC	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Type I toxin-antitoxin system, toxin Ldr (1-35)

Sequences

Toxin

Protein

• Length: 36 a.a.
• Molecular weight: 3882.70 Da
• Isoelectric Point: 9.0157

>T64907 WP_001295224.1 NZ_CP016625:c4708765-4708658 [Escherichia coli O157:H7]
MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK

Nucleotide

• Length: 108 bp

>T64907 NZ_CP016625:c4708765-4708658 [Escherichia coli O157:H7]
ATGACGCTCGCAGAGCTGGGCATGGCCTTCTGGCATGATTTAGCGGCTCCGGTCATTGCTGGCATTCTTGCCAGTATGAT
CGTGAACTGGCTGAACAAGCGGAAGTAA

Antitoxin

Nucleotide

• Length: 66 bp

>AT64907 NZ_CP016625:4708814-4708879 [Escherichia coli O157:H7]
GTCTAGGTTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCT

Structures

Toxin

• AlphaFold DB: A0A4P7TSJ7

Antitoxin