Detailed information of TA system
Overview
TA module
Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-YefM |
Location | 1292847..1293379 | Replicon | chromosome |
Accession | NZ_CP016279 | ||
Organism | Streptomyces griseochromogenes strain ATCC 14511 |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | L1KUL2 |
Locus tag | AVL59_RS06130 | Protein ID | WP_009321768.1 |
Coordinates | 1293125..1293379 (+) | Length | 85 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | A0A1B1ARN2 |
Locus tag | AVL59_RS06125 | Protein ID | WP_067300168.1 |
Coordinates | 1292847..1293128 (+) | Length | 94 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
AVL59_RS06105 | 1289032..1290048 | + | 1017 | WP_099053008.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
AVL59_RS06110 | 1290101..1290850 | + | 750 | WP_067300166.1 | ROK family protein | - |
AVL59_RS06115 | 1290874..1291422 | - | 549 | WP_208870317.1 | hypothetical protein | - |
AVL59_RS06120 | 1291607..1292695 | + | 1089 | WP_067300167.1 | redox-regulated ATPase YchF | - |
AVL59_RS06125 | 1292847..1293128 | + | 282 | WP_067300168.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
AVL59_RS06130 | 1293125..1293379 | + | 255 | WP_009321768.1 | Txe/YoeB family addiction module toxin | Toxin |
AVL59_RS06135 | 1293497..1295377 | - | 1881 | WP_067300169.1 | DUF2075 domain-containing protein | - |
AVL59_RS06140 | 1295488..1297545 | - | 2058 | WP_067300170.1 | DUF2075 domain-containing protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 10098.61 Da Isoelectric Point: 8.4390
>T64363 WP_009321768.1 NZ_CP016279:1293125-1293379 [Streptomyces griseochromogenes]
VRLVFEDQGWEDYTSWLKNDRKMLARINKLIEDVKRDPFTGIGKPEPLKYHLPGAWSRRIDDEHRLVYLVTDKEIVILAA
RYHY
VRLVFEDQGWEDYTSWLKNDRKMLARINKLIEDVKRDPFTGIGKPEPLKYHLPGAWSRRIDDEHRLVYLVTDKEIVILAA
RYHY
Download Length: 255 bp
>T64363 NZ_CP016279:1293125-1293379 [Streptomyces griseochromogenes]
GTGAGGCTTGTCTTCGAGGATCAGGGCTGGGAGGACTACACGTCCTGGCTCAAGAACGACCGCAAGATGCTCGCTCGGAT
CAACAAACTCATCGAGGACGTCAAGCGTGACCCCTTCACGGGGATCGGCAAGCCCGAGCCGTTGAAGTACCACTTGCCCG
GGGCGTGGTCGAGACGGATCGACGATGAGCACCGCCTTGTGTACCTGGTCACGGACAAGGAGATCGTGATCCTCGCGGCT
CGCTATCACTACTGA
GTGAGGCTTGTCTTCGAGGATCAGGGCTGGGAGGACTACACGTCCTGGCTCAAGAACGACCGCAAGATGCTCGCTCGGAT
CAACAAACTCATCGAGGACGTCAAGCGTGACCCCTTCACGGGGATCGGCAAGCCCGAGCCGTTGAAGTACCACTTGCCCG
GGGCGTGGTCGAGACGGATCGACGATGAGCACCGCCTTGTGTACCTGGTCACGGACAAGGAGATCGTGATCCTCGCGGCT
CGCTATCACTACTGA
Antitoxin
Download Length: 94 a.a. Molecular weight: 10047.29 Da Isoelectric Point: 4.8307
>AT64363 WP_067300168.1 NZ_CP016279:1292847-1293128 [Streptomyces griseochromogenes]
MSITASEARKALFPLIKKVNDDHEAIEIVSKHGNAVLVSAEDYAALREGSYLLRSPVNARRLLKAYENALSNVNVSEREL
IDPDAADPAAGDA
MSITASEARKALFPLIKKVNDDHEAIEIVSKHGNAVLVSAEDYAALREGSYLLRSPVNARRLLKAYENALSNVNVSEREL
IDPDAADPAAGDA
Download Length: 282 bp
>AT64363 NZ_CP016279:1292847-1293128 [Streptomyces griseochromogenes]
ATGTCGATAACTGCGAGCGAAGCCCGCAAGGCTCTCTTTCCGCTGATCAAGAAGGTCAACGACGACCACGAGGCCATCGA
GATCGTCTCCAAGCATGGCAACGCCGTGCTTGTCTCGGCCGAGGACTACGCGGCGCTGCGCGAGGGCTCGTACCTGCTGC
GCTCGCCTGTGAACGCACGGCGACTGCTCAAGGCGTACGAGAATGCCCTGAGCAACGTCAACGTGTCGGAGCGCGAGCTG
ATCGATCCAGATGCGGCGGATCCTGCTGCGGGTGACGCGTGA
ATGTCGATAACTGCGAGCGAAGCCCGCAAGGCTCTCTTTCCGCTGATCAAGAAGGTCAACGACGACCACGAGGCCATCGA
GATCGTCTCCAAGCATGGCAACGCCGTGCTTGTCTCGGCCGAGGACTACGCGGCGCTGCGCGAGGGCTCGTACCTGCTGC
GCTCGCCTGTGAACGCACGGCGACTGCTCAAGGCGTACGAGAATGCCCTGAGCAACGTCAACGTGTCGGAGCGCGAGCTG
ATCGATCCAGATGCGGCGGATCCTGCTGCGGGTGACGCGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A540PPG9 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1B1ARN2 |