Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
Location | 268256..268766 | Replicon | chromosome |
Accession | NZ_CP015553 | ||
Organism | Staphylococcus carnosus strain TMW 2.1596 |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | - |
Locus tag | A2I68_RS01395 | Protein ID | WP_169929359.1 |
Coordinates | 268512..268766 (+) | Length | 85 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | B9DKQ3 |
Locus tag | A2I68_RS01390 | Protein ID | WP_012664283.1 |
Coordinates | 268256..268504 (+) | Length | 83 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
A2I68_RS01370 (A2I68_01335) | 264442..264954 | + | 513 | WP_012664280.1 | YwhD family protein | - |
A2I68_RS01375 (A2I68_01340) | 265138..265755 | - | 618 | WP_046100215.1 | LysE family transporter | - |
A2I68_RS01380 (A2I68_01345) | 265962..266201 | - | 240 | WP_231635373.1 | fatty acid desaturase | - |
A2I68_RS01385 (A2I68_01355) | 266505..267916 | + | 1412 | Protein_255 | PLP-dependent aminotransferase family protein | - |
A2I68_RS01390 (A2I68_01360) | 268256..268504 | + | 249 | WP_012664283.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
A2I68_RS01395 | 268512..268766 | + | 255 | WP_169929359.1 | Txe/YoeB family addiction module toxin | Toxin |
A2I68_RS01400 (A2I68_01365) | 269254..270444 | + | 1191 | WP_046100212.1 | amidohydrolase | - |
A2I68_RS01405 (A2I68_01370) | 270605..271021 | + | 417 | WP_046100211.1 | DUF1934 family protein | - |
A2I68_RS01410 (A2I68_01375) | 271023..272687 | + | 1665 | WP_012664287.1 | arginine--tRNA ligase | - |
A2I68_RS01415 (A2I68_01380) | 272819..273721 | + | 903 | WP_046100210.1 | ABC transporter substrate-binding protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 9914.30 Da Isoelectric Point: 9.8956
>T63182 WP_169929359.1 NZ_CP015553:268512-268766 [Staphylococcus carnosus]
ISFSPEVFEDYKNWQTQDKKVWKKINQLIKSIDRDGMLDGIGKPERLKGGFSGWYSRRITQDHRLVYKVTSESILAASCK
YHYQ
ISFSPEVFEDYKNWQTQDKKVWKKINQLIKSIDRDGMLDGIGKPERLKGGFSGWYSRRITQDHRLVYKVTSESILAASCK
YHYQ
Download Length: 255 bp
>T63182 NZ_CP015553:268512-268766 [Staphylococcus carnosus]
ATTTCATTTTCTCCTGAAGTATTTGAAGATTATAAAAATTGGCAAACTCAAGATAAAAAAGTTTGGAAGAAAATCAATCA
ATTGATTAAAAGTATTGATCGTGATGGCATGTTAGATGGAATTGGTAAGCCAGAACGTTTAAAAGGTGGTTTCAGTGGTT
GGTATAGCAGACGTATCACACAAGATCACAGATTAGTATATAAAGTAACAAGTGAATCAATTTTAGCTGCTTCATGCAAG
TATCATTATCAATAA
ATTTCATTTTCTCCTGAAGTATTTGAAGATTATAAAAATTGGCAAACTCAAGATAAAAAAGTTTGGAAGAAAATCAATCA
ATTGATTAAAAGTATTGATCGTGATGGCATGTTAGATGGAATTGGTAAGCCAGAACGTTTAAAAGGTGGTTTCAGTGGTT
GGTATAGCAGACGTATCACACAAGATCACAGATTAGTATATAAAGTAACAAGTGAATCAATTTTAGCTGCTTCATGCAAG
TATCATTATCAATAA
Antitoxin
Download Length: 83 a.a. Molecular weight: 9305.30 Da Isoelectric Point: 4.2081
>AT63182 WP_012664283.1 NZ_CP015553:268256-268504 [Staphylococcus carnosus]
MAVETYSNARKNFRSLIKQVNENSEAITITTNEENAVLMSETDYNAIMETLYLQQNPANAAHLKRSIEQLEKGDSVQVEI
DE
MAVETYSNARKNFRSLIKQVNENSEAITITTNEENAVLMSETDYNAIMETLYLQQNPANAAHLKRSIEQLEKGDSVQVEI
DE
Download Length: 249 bp
>AT63182 NZ_CP015553:268256-268504 [Staphylococcus carnosus]
ATGGCTGTTGAAACATACTCAAATGCTAGAAAAAACTTTAGAAGTTTAATTAAACAAGTAAATGAAAACAGTGAAGCTAT
TACCATCACAACAAATGAAGAAAACGCCGTTTTAATGTCTGAAACTGATTATAATGCAATAATGGAGACTCTTTACTTAC
AACAAAACCCAGCTAACGCTGCACATCTCAAACGTTCAATTGAACAACTAGAAAAAGGCGATTCTGTTCAGGTAGAAATA
GATGAGTAA
ATGGCTGTTGAAACATACTCAAATGCTAGAAAAAACTTTAGAAGTTTAATTAAACAAGTAAATGAAAACAGTGAAGCTAT
TACCATCACAACAAATGAAGAAAACGCCGTTTTAATGTCTGAAACTGATTATAATGCAATAATGGAGACTCTTTACTTAC
AACAAAACCCAGCTAACGCTGCACATCTCAAACGTTCAATTGAACAACTAGAAAAAGGCGATTCTGTTCAGGTAGAAATA
GATGAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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