Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/HTH(antitoxin) |
Location | 1653213..1653815 | Replicon | chromosome |
Accession | NZ_CP015138 | ||
Organism | Escherichia coli strain Ecol_732 |
Toxin (Protein)
Gene name | higB | Uniprot ID | S1P416 |
Locus tag | A4X18_RS08075 | Protein ID | WP_000897302.1 |
Coordinates | 1653504..1653815 (-) | Length | 104 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | - |
Locus tag | A4X18_RS08070 | Protein ID | WP_000356397.1 |
Coordinates | 1653213..1653503 (-) | Length | 97 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
A4X18_RS08035 | 1648520..1649449 | + | 930 | WP_000027696.1 | formate dehydrogenase accessory protein FdhE | - |
A4X18_RS08040 | 1649631..1649873 | - | 243 | WP_001068514.1 | ribbon-helix-helix domain-containing protein | - |
A4X18_RS08045 | 1650163..1651011 | + | 849 | WP_001038650.1 | hypothetical protein | - |
A4X18_RS08050 | 1651327..1651776 | + | 450 | WP_032140890.1 | hypothetical protein | - |
A4X18_RS08055 | 1651961..1652179 | - | 219 | WP_001251293.1 | ribbon-helix-helix domain-containing protein | - |
A4X18_RS08060 | 1652576..1652854 | - | 279 | WP_001296612.1 | hypothetical protein | - |
A4X18_RS08070 | 1653213..1653503 | - | 291 | WP_000356397.1 | helix-turn-helix domain-containing protein | Antitoxin |
A4X18_RS08075 | 1653504..1653815 | - | 312 | WP_000897302.1 | hypothetical protein | Toxin |
A4X18_RS08080 | 1654044..1654952 | + | 909 | WP_001385591.1 | alpha/beta hydrolase | - |
A4X18_RS08085 | 1655016..1655957 | - | 942 | WP_001297068.1 | fatty acid biosynthesis protein FabY | - |
A4X18_RS08090 | 1656002..1656439 | - | 438 | WP_000560981.1 | D-tyrosyl-tRNA(Tyr) deacylase | - |
A4X18_RS08095 | 1656436..1657308 | - | 873 | WP_000920762.1 | virulence factor BrkB family protein | - |
A4X18_RS08100 | 1657302..1657901 | - | 600 | WP_001296610.1 | glucose-1-phosphatase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 a.a. Molecular weight: 12203.19 Da Isoelectric Point: 9.7791
>T62477 WP_000897302.1 NZ_CP015138:c1653815-1653504 [Escherichia coli]
MLFIETEIFTEDVQKLLNDDEFSRFQFFLALNPDYGEVIPETGGLRKVRWVSGGKGKRAGVRVIYFHQVKHYEIRLLLIY
RKGIKDDLSPQEKAMLRLLNTRW
MLFIETEIFTEDVQKLLNDDEFSRFQFFLALNPDYGEVIPETGGLRKVRWVSGGKGKRAGVRVIYFHQVKHYEIRLLLIY
RKGIKDDLSPQEKAMLRLLNTRW
Download Length: 312 bp
>T62477 NZ_CP015138:c1653815-1653504 [Escherichia coli]
ATGCTCTTCATCGAAACGGAAATTTTTACTGAAGATGTTCAAAAACTGCTGAACGACGATGAATTCAGTCGTTTTCAGTT
TTTCCTGGCCTTGAATCCTGACTATGGTGAGGTAATACCTGAAACTGGTGGGTTAAGAAAGGTTCGATGGGTCTCAGGAG
GAAAGGGGAAACGTGCTGGTGTCAGGGTTATTTACTTTCATCAGGTTAAACATTATGAGATCAGATTACTGCTTATTTAT
CGTAAGGGTATTAAAGATGATCTGTCTCCCCAGGAAAAAGCAATGCTCCGGTTGTTAAATACGAGGTGGTAA
ATGCTCTTCATCGAAACGGAAATTTTTACTGAAGATGTTCAAAAACTGCTGAACGACGATGAATTCAGTCGTTTTCAGTT
TTTCCTGGCCTTGAATCCTGACTATGGTGAGGTAATACCTGAAACTGGTGGGTTAAGAAAGGTTCGATGGGTCTCAGGAG
GAAAGGGGAAACGTGCTGGTGTCAGGGTTATTTACTTTCATCAGGTTAAACATTATGAGATCAGATTACTGCTTATTTAT
CGTAAGGGTATTAAAGATGATCTGTCTCCCCAGGAAAAAGCAATGCTCCGGTTGTTAAATACGAGGTGGTAA
Antitoxin
Download Length: 97 a.a. Molecular weight: 10846.43 Da Isoelectric Point: 10.8907
>AT62477 WP_000356397.1 NZ_CP015138:c1653503-1653213 [Escherichia coli]
MDKALFERLTHSMAQMNEIIEGTRQPSRTFEVDAMKIKEIRRASGLSQSKFADLISVSVDTLRNWEQGRRSPTGPAKALL
RAIANDPQHVLQALNR
MDKALFERLTHSMAQMNEIIEGTRQPSRTFEVDAMKIKEIRRASGLSQSKFADLISVSVDTLRNWEQGRRSPTGPAKALL
RAIANDPQHVLQALNR
Download Length: 291 bp
>AT62477 NZ_CP015138:c1653503-1653213 [Escherichia coli]
ATGGATAAGGCACTTTTTGAGCGGTTGACTCACAGCATGGCCCAGATGAATGAAATTATTGAAGGAACGCGACAGCCTTC
ACGGACTTTTGAAGTTGATGCTATGAAAATCAAAGAAATACGCCGCGCTTCAGGGTTGTCACAATCTAAATTTGCCGATC
TTATTTCCGTAAGCGTAGACACGTTGCGTAACTGGGAGCAGGGGCGACGTTCACCGACCGGGCCTGCAAAGGCTTTGCTG
CGAGCGATTGCCAATGATCCGCAACATGTGCTGCAAGCACTTAACCGTTAG
ATGGATAAGGCACTTTTTGAGCGGTTGACTCACAGCATGGCCCAGATGAATGAAATTATTGAAGGAACGCGACAGCCTTC
ACGGACTTTTGAAGTTGATGCTATGAAAATCAAAGAAATACGCCGCGCTTCAGGGTTGTCACAATCTAAATTTGCCGATC
TTATTTCCGTAAGCGTAGACACGTTGCGTAACTGGGAGCAGGGGCGACGTTCACCGACCGGGCCTGCAAAGGCTTTGCTG
CGAGCGATTGCCAATGATCCGCAACATGTGCTGCAAGCACTTAACCGTTAG
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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