Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) DinJ-YafQ (relBE)/YafQ-RelB
Location 5048..5580 Replicon plasmid unnamed 2
Accession NZ_CP014527
Organism Haematospirillum jordaniae strain H5569

Toxin (Protein)


Gene name yafQ Uniprot ID A0A143DG99
Locus tag AY555_RS10235 Protein ID WP_066137009.1
Coordinates 5048..5320 (-) Length 91 a.a.

Antitoxin (Protein)


Gene name dinJ Uniprot ID A0A143DH71
Locus tag AY555_RS10240 Protein ID WP_066137371.1
Coordinates 5320..5580 (-) Length 87 a.a.

Genomic Context

AY555_RS10210AY555_RS10225AY555_RS10245AY555_RS10250AY555_RS10265AY555_RS10215AY555_RS10220AY555_RS10230AY555_RS10235AY555_RS10240AY555_RS10255AY555_RS10260
Location: 644..1846 (1203 bp)
Type: Others
Protein ID: WP_066133065.1
Location: 3616..4626 (1011 bp)
Type: Others
Protein ID: WP_066137004.1
Location: 5805..6446 (642 bp)
Type: Others
Protein ID: WP_066137011.1
Location: 6486..6752 (267 bp)
Type: Others
Protein ID: WP_066137013.1
Location: 9625..10008 (384 bp)
Type: Others
Protein ID: WP_066137018.1
Location: 1903..2583 (681 bp)
Type: Others
Protein ID: WP_167798514.1
Location: 2928..3204 (277 bp)
Type: Others
Protein ID: Protein_3
Location: 4623..4877 (255 bp)
Type: Others
Protein ID: WP_066137006.1
Location: 5048..5320 (273 bp)
Type: Toxin
Protein ID: WP_066137009.1
Location: 5320..5580 (261 bp)
Type: Antitoxin
Protein ID: WP_066137371.1
Location: 6870..8576 (1707 bp)
Type: Others
Protein ID: WP_066137015.1
Location: 8656..8991 (336 bp)
Type: Others
Protein ID: WP_066137017.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
AY555_RS10210644..1846+1203WP_066133065.1transposase-
AY555_RS102151903..2583-681WP_167798514.1hypothetical protein-
AY555_RS102202928..3204-277Protein_3single-stranded DNA-binding protein-
AY555_RS102253616..4626+1011WP_066137004.1calcium-binding protein-
AY555_RS102304623..4877-255WP_066137006.1phage major tail tube protein-
AY555_RS102355048..5320-273WP_066137009.1type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE familyToxin
AY555_RS102405320..5580-261WP_066137371.1type II toxin-antitoxin system RelB/DinJ family antitoxinAntitoxin
AY555_RS102455805..6446+642WP_066137011.1AAA family ATPase-
AY555_RS102506486..6752+267WP_066137013.1ribbon-helix-helix domain-containing protein-
AY555_RS102556870..8576-1707WP_066137015.1recombinase family protein-
AY555_RS102608656..8991-336WP_066137017.1hypothetical protein-
AY555_RS102659625..10008+384WP_066137018.1MbcA/ParS/Xre antitoxin family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideNon-Mobilizable plasmid-ugd1..303116303116


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-88)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(3-84)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10568.13 Da        Isoelectric Point: 10.2626

>T61402 WP_066137009.1 NZ_CP014527:c5320-5048 [Haematospirillum jordaniae]
MRHPEYSGQFKRDVKASGRRGKDMSKLKVLIELLIAGTPLPATYLDHPLKGRWRSYRDAHIESDWLLIYKINGNVVRFER
TGRHTDLFDE

Download         Length: 273 bp

>T61402 NZ_CP014527:c5320-5048 [Haematospirillum jordaniae]
ATGCGGCACCCGGAGTATTCTGGCCAGTTCAAGCGTGACGTCAAGGCTTCTGGAAGGCGTGGCAAGGACATGAGCAAGCT
CAAGGTTCTGATAGAGCTGCTGATAGCAGGTACGCCGTTGCCTGCCACGTATCTCGACCACCCGCTTAAAGGGCGGTGGC
GTAGCTACCGGGATGCCCACATTGAGTCGGACTGGCTTCTGATCTACAAAATCAATGGCAATGTTGTCCGCTTTGAACGA
ACTGGACGGCACACCGATCTTTTCGACGAATAA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9257.61 Da        Isoelectric Point: 5.5882

>AT61402 WP_066137371.1 NZ_CP014527:c5580-5320 [Haematospirillum jordaniae]
MKANAFVRARIDETLKNEAAAVLAGMGLTVSDVVRIALTKIAKEKTLPFDMRVPNALTAETLAKSEHGEDVHHANDADDL
FAQLGI

Download         Length: 261 bp

>AT61402 NZ_CP014527:c5580-5320 [Haematospirillum jordaniae]
ATGAAAGCAAATGCATTTGTCCGCGCCCGGATCGACGAGACGCTAAAAAACGAAGCCGCTGCCGTACTGGCGGGTATGGG
GCTTACTGTGTCCGATGTAGTGCGCATTGCCCTCACCAAAATCGCCAAAGAAAAGACGCTGCCATTCGACATGCGCGTTC
CTAACGCACTGACGGCGGAAACGCTGGCGAAAAGTGAGCATGGTGAAGATGTTCACCATGCCAACGATGCGGATGATCTG
TTTGCCCAGCTGGGTATTTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
AlphaFold DBA0A143DG99

Antitoxin

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Source
ID
Structure
AlphaFold DBA0A143DH71

References