Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2629597..2630120 Replicon chromosome
Accession NZ_CP014432
Organism Staphylococcus aureus strain USA300-SUR20

Toxin (Protein)


Gene name yoeB Uniprot ID X5DYX7
Locus tag AYM33_RS14000 Protein ID WP_000074048.1
Coordinates 2629597..2629863 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID W8TQT5
Locus tag AYM33_RS14005 Protein ID WP_000587616.1
Coordinates 2629863..2630120 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AYM33_RS13980 2624904..2626091 - 1188 WP_000026194.1 MFS transporter -
AYM33_RS13985 2626487..2627263 - 777 WP_000072147.1 iron export ABC transporter permease subunit FetB -
AYM33_RS13990 2627256..2627918 - 663 WP_000923520.1 ATP-binding cassette domain-containing protein -
AYM33_RS13995 2628166..2629242 - 1077 WP_077445432.1 M42 family metallopeptidase -
AYM33_RS14000 2629597..2629863 - 267 WP_000074048.1 Txe/YoeB family addiction module toxin Toxin
AYM33_RS14005 2629863..2630120 - 258 WP_000587616.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
AYM33_RS14015 2630479..2630934 + 456 WP_000732082.1 DUF1307 domain-containing protein -
AYM33_RS14020 2631102..2632679 - 1578 WP_000143503.1 FMN-binding glutamate synthase family protein -
AYM33_RS14025 2632874..2633623 + 750 WP_000072444.1 hypothetical protein -
AYM33_RS14030 2633847..2635040 - 1194 WP_000675401.1 MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(25-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10648.23 Da        Isoelectric Point: 10.1384

>T61158 WP_000074048.1 NZ_CP014432:c2629863-2629597 [Staphylococcus aureus]
MSNYTVKIKNSAKSDLKKIKHSYLKKSFLEIVETLKNDPYKITQSFEKLEPKYLERYSRRINHQHRVVYTVDDRNKEVLI
LSAWSHYD

Download         Length: 267 bp

>T61158 NZ_CP014432:c2629863-2629597 [Staphylococcus aureus]
ATGAGCAATTACACGGTTAAGATTAAAAATTCAGCGAAATCAGATTTAAAGAAAATAAAACATTCTTATTTAAAGAAGTC
ATTTTTAGAAATTGTTGAGACTTTAAAAAATGATCCGTATAAAATAACACAATCTTTTGAAAAATTAGAGCCTAAATATT
TAGAGCGATATTCAAGAAGAATTAACCATCAGCACAGGGTCGTCTATACCGTAGATGATCGAAATAAAGAAGTATTAATA
CTATCGGCATGGTCACATTATGATTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9774.73 Da        Isoelectric Point: 4.1353

>AT61158 WP_000587616.1 NZ_CP014432:c2630120-2629863 [Staphylococcus aureus]
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETIYLESTGTMDKVREREKDNSGTTNIDDI
DWDNL

Download         Length: 258 bp

>AT61158 NZ_CP014432:c2630120-2629863 [Staphylococcus aureus]
ATGATTATCACTAGCCCTACAGAAGCGAGAAAAGATTTTTATCAATTACTAAAAAATGTTAATAATAATCACGAACCAAT
TTATATTAGTGGCAATAATGCCGAAAATAATGCTGTGATTATAGGTTTAGAAGATTGGAAAAGTATACAAGAGACAATAT
ATCTTGAATCTACTGGTACAATGGACAAAGTAAGAGAAAGAGAAAAAGATAATAGTGGTACAACAAATATAGATGATATT
GATTGGGATAATCTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 7V6W
PDB 7V5Y
PDB 7V5Z

Antitoxin

Source ID Structure
PDB 7V6W
PDB 7V5Z
PDB 7V5Y
AlphaFold DB W8TQT5

References