Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2575313..2575830 Replicon chromosome
Accession NZ_CP014402
Organism Staphylococcus aureus strain USA300-SUR11

Toxin (Protein)


Gene name yoeB Uniprot ID T1YC79
Locus tag AYM24_RS13685 Protein ID WP_000113262.1
Coordinates 2575313..2575579 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID A0A5A8VWS3
Locus tag AYM24_RS13690 Protein ID WP_000584502.1
Coordinates 2575579..2575830 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AYM24_RS13660 2570739..2571275 - 537 WP_000169317.1 GNAT family N-acetyltransferase -
AYM24_RS13665 2571508..2572332 - 825 WP_000572040.1 formate/nitrite transporter family protein -
AYM24_RS13670 2572549..2572731 - 183 WP_000230294.1 hypothetical protein -
AYM24_RS13675 2572815..2573282 - 468 WP_000153344.1 SRPBCC domain-containing protein -
AYM24_RS13680 2573468..2575018 - 1551 WP_000727762.1 zinc ABC transporter substrate-binding lipoprotein AdcA -
AYM24_RS15810 2575207..2575278 - 72 Protein_2536 hypothetical protein -
AYM24_RS13685 2575313..2575579 - 267 WP_000113262.1 Txe/YoeB family addiction module toxin Toxin
AYM24_RS13690 2575579..2575830 - 252 WP_000584502.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
AYM24_RS13695 2575995..2576096 - 102 WP_001791744.1 hypothetical protein -
AYM24_RS13700 2576103..2576702 - 600 WP_000162813.1 DsbA family protein -
AYM24_RS13705 2576721..2577080 - 360 WP_000819847.1 DUF4467 domain-containing protein -
AYM24_RS13710 2577335..2578585 + 1251 Protein_2542 FemA/FemB family glycyltransferase FmhA -
AYM24_RS13715 2578682..2579413 - 732 WP_000615461.1 amino acid ABC transporter ATP-binding protein -
AYM24_RS13720 2579410..2580129 - 720 WP_000479576.1 amino acid ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10437.95 Da        Isoelectric Point: 9.9143

>T60995 WP_000113262.1 NZ_CP014402:c2575579-2575313 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY

Download         Length: 267 bp

>T60995 NZ_CP014402:c2575579-2575313 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9417.65 Da        Isoelectric Point: 4.4702

>AT60995 WP_000584502.1 NZ_CP014402:c2575830-2575579 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSVMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV

Download         Length: 252 bp

>AT60995 NZ_CP014402:c2575830-2575579 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGTTATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7CUA
PDB 6L8E

Antitoxin

Source ID Structure
AlphaFold DB A0A5A8VWS3

References