Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2562273..2562790 Replicon chromosome
Accession NZ_CP014362
Organism Staphylococcus aureus strain USA300-SUR1

Toxin (Protein)


Gene name yoeB Uniprot ID T1YC79
Locus tag AYM13_RS13630 Protein ID WP_000113262.1
Coordinates 2562273..2562539 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID A0A5A8VWS3
Locus tag AYM13_RS13635 Protein ID WP_000584502.1
Coordinates 2562539..2562790 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AYM13_RS13600 2557699..2558235 - 537 WP_000169317.1 GNAT family N-acetyltransferase -
AYM13_RS13605 2558468..2559292 - 825 WP_000572040.1 formate/nitrite transporter family protein -
AYM13_RS13610 2559509..2559691 - 183 WP_000230294.1 hypothetical protein -
AYM13_RS13615 2559775..2560242 - 468 WP_000153344.1 SRPBCC domain-containing protein -
AYM13_RS13620 2560428..2561978 - 1551 WP_000727762.1 zinc ABC transporter substrate-binding lipoprotein AdcA -
AYM13_RS13625 2562167..2562238 - 72 Protein_2525 hypothetical protein -
AYM13_RS13630 2562273..2562539 - 267 WP_000113262.1 Txe/YoeB family addiction module toxin Toxin
AYM13_RS13635 2562539..2562790 - 252 WP_000584502.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
AYM13_RS13640 2562955..2563056 - 102 WP_001791744.1 hypothetical protein -
AYM13_RS13645 2563063..2563662 - 600 WP_000162813.1 DsbA family protein -
AYM13_RS13650 2563681..2564040 - 360 WP_000819847.1 DUF4467 domain-containing protein -
AYM13_RS13655 2564295..2565545 + 1251 WP_001012222.1 FemA/FemB family glycyltransferase FmhA -
AYM13_RS13660 2565642..2566373 - 732 WP_000615461.1 amino acid ABC transporter ATP-binding protein -
AYM13_RS13665 2566370..2567089 - 720 WP_000479576.1 amino acid ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10437.95 Da        Isoelectric Point: 9.9143

>T60815 WP_000113262.1 NZ_CP014362:c2562539-2562273 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY

Download         Length: 267 bp

>T60815 NZ_CP014362:c2562539-2562273 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9417.65 Da        Isoelectric Point: 4.4702

>AT60815 WP_000584502.1 NZ_CP014362:c2562790-2562539 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSVMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV

Download         Length: 252 bp

>AT60815 NZ_CP014362:c2562790-2562539 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGTTATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7CUA
PDB 6L8E

Antitoxin

Source ID Structure
AlphaFold DB A0A5A8VWS3

References