Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | I | Classification (family/domain) | holin-SprF1/- |
Location | 680552..681022 | Replicon | chromosome |
Accession | NZ_CP013922 | ||
Organism | Staphylococcus xylosus strain S170 |
Toxin (Protein)
Gene name | holin | Uniprot ID | - |
Locus tag | AWC37_RS03345 | Protein ID | WP_081224964.1 |
Coordinates | 680765..681022 (+) | Length | 86 a.a. |
Antitoxin (RNA)
Gene name | SprF1 | ||
Locus tag | - | ||
Coordinates | 680552..680683 (-) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
AWC37_RS03320 | 676214..676546 | + | 333 | WP_081224960.1 | DUF2977 domain-containing protein | - |
AWC37_RS03325 | 676603..678489 | + | 1887 | WP_081224961.1 | glucosaminidase domain-containing protein | - |
AWC37_RS03330 | 678524..678811 | + | 288 | WP_081224962.1 | hypothetical protein | - |
AWC37_RS13965 | 679199..680317 | + | 1119 | WP_182475319.1 | hypothetical protein | - |
AWC37_RS03340 | 680453..680560 | + | 108 | WP_081224963.1 | putative holin-like toxin | - |
- | 680552..680683 | - | 132 | NuclAT_0 | - | Antitoxin |
- | 680552..680683 | - | 132 | NuclAT_0 | - | Antitoxin |
- | 680552..680683 | - | 132 | NuclAT_0 | - | Antitoxin |
- | 680552..680683 | - | 132 | NuclAT_0 | - | Antitoxin |
AWC37_RS03345 | 680765..681022 | + | 258 | WP_081224964.1 | phage holin | Toxin |
AWC37_RS03350 | 681450..682397 | + | 948 | WP_081225257.1 | peptidoglycan recognition protein family protein | - |
AWC37_RS03355 | 682641..683684 | - | 1044 | WP_081224965.1 | hypothetical protein | - |
AWC37_RS13825 | 684214..684375 | + | 162 | WP_155238587.1 | hypothetical protein | - |
AWC37_RS13830 | 685519..685686 | + | 168 | WP_155238586.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Prophage | - | - | 640799..690253 | 49454 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 86 a.a. Molecular weight: 9507.36 Da Isoelectric Point: 10.4323
>T59581 WP_081224964.1 NZ_CP013922:680765-681022 [Staphylococcus xylosus]
MDVKVTVIVRVLGLILVLVNQWLSNKGISPIPVDEATIMTIAVALLTTWKDNPLTNAAKESNKIMKELKTQNKYEKVVMR
SGKEK
MDVKVTVIVRVLGLILVLVNQWLSNKGISPIPVDEATIMTIAVALLTTWKDNPLTNAAKESNKIMKELKTQNKYEKVVMR
SGKEK
Download Length: 258 bp
>T59581 NZ_CP013922:680765-681022 [Staphylococcus xylosus]
ATGGATGTAAAAGTAACAGTAATCGTAAGAGTATTAGGTTTGATTTTGGTGTTAGTGAATCAGTGGTTATCAAATAAAGG
TATTAGTCCTATTCCAGTTGACGAAGCAACAATAATGACAATAGCAGTAGCATTGCTTACGACATGGAAAGACAACCCGT
TAACTAATGCAGCTAAAGAAAGTAATAAAATCATGAAAGAATTAAAAACGCAAAATAAATATGAAAAAGTAGTGATGCGT
AGTGGCAAAGAAAAGTGA
ATGGATGTAAAAGTAACAGTAATCGTAAGAGTATTAGGTTTGATTTTGGTGTTAGTGAATCAGTGGTTATCAAATAAAGG
TATTAGTCCTATTCCAGTTGACGAAGCAACAATAATGACAATAGCAGTAGCATTGCTTACGACATGGAAAGACAACCCGT
TAACTAATGCAGCTAAAGAAAGTAATAAAATCATGAAAGAATTAAAAACGCAAAATAAATATGAAAAAGTAGTGATGCGT
AGTGGCAAAGAAAAGTGA
Antitoxin
Download Length: 132 bp
>AT59581 NZ_CP013922:c680683-680552 [Staphylococcus xylosus]
ATATATAGAAAAAGGGCAATACACCATAAGTGTATCGCCCCAGTGAGCCCGTTAAAAAGACGGTGGCTAGTTACTAATAA
TTATCAAAAAATAATCATCGAAACCGGCCAAAGTTAGCGATGGTTATTTTTT
ATATATAGAAAAAGGGCAATACACCATAAGTGTATCGCCCCAGTGAGCCCGTTAAAAAGACGGTGGCTAGTTACTAATAA
TTATCAAAAAATAATCATCGAAACCGGCCAAAGTTAGCGATGGTTATTTTTT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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