Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/HTH(antitoxin) |
Location | 4442116..4442718 | Replicon | chromosome |
Accession | NZ_CP013835 | ||
Organism | Escherichia coli strain JJ2434 |
Toxin (Protein)
Gene name | higB | Uniprot ID | S1P416 |
Locus tag | AVR68_RS23365 | Protein ID | WP_000897302.1 |
Coordinates | 4442116..4442427 (+) | Length | 104 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | - |
Locus tag | AVR68_RS23370 | Protein ID | WP_000356397.1 |
Coordinates | 4442428..4442718 (+) | Length | 97 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
AVR68_RS23340 | 4438030..4438629 | + | 600 | WP_001296610.1 | glucose-1-phosphatase | - |
AVR68_RS23345 | 4438623..4439495 | + | 873 | WP_000920762.1 | virulence factor BrkB family protein | - |
AVR68_RS23350 | 4439492..4439929 | + | 438 | WP_000560981.1 | D-tyrosyl-tRNA(Tyr) deacylase | - |
AVR68_RS23355 | 4439974..4440915 | + | 942 | WP_001297068.1 | fatty acid biosynthesis protein FabY | - |
AVR68_RS23360 | 4440979..4441887 | - | 909 | WP_001385591.1 | alpha/beta hydrolase | - |
AVR68_RS23365 | 4442116..4442427 | + | 312 | WP_000897302.1 | hypothetical protein | Toxin |
AVR68_RS23370 | 4442428..4442718 | + | 291 | WP_000356397.1 | helix-turn-helix domain-containing protein | Antitoxin |
AVR68_RS23380 | 4443077..4443355 | + | 279 | WP_001296612.1 | hypothetical protein | - |
AVR68_RS23385 | 4443752..4443970 | + | 219 | WP_001251293.1 | ribbon-helix-helix domain-containing protein | - |
AVR68_RS23390 | 4444155..4444604 | - | 450 | WP_032140890.1 | hypothetical protein | - |
AVR68_RS23395 | 4444920..4445768 | - | 849 | WP_001038650.1 | hypothetical protein | - |
AVR68_RS23400 | 4446058..4446300 | + | 243 | WP_001068514.1 | ribbon-helix-helix domain-containing protein | - |
AVR68_RS23405 | 4446482..4447411 | - | 930 | WP_000027696.1 | formate dehydrogenase accessory protein FdhE | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 a.a. Molecular weight: 12203.19 Da Isoelectric Point: 9.7791
>T59461 WP_000897302.1 NZ_CP013835:4442116-4442427 [Escherichia coli]
MLFIETEIFTEDVQKLLNDDEFSRFQFFLALNPDYGEVIPETGGLRKVRWVSGGKGKRAGVRVIYFHQVKHYEIRLLLIY
RKGIKDDLSPQEKAMLRLLNTRW
MLFIETEIFTEDVQKLLNDDEFSRFQFFLALNPDYGEVIPETGGLRKVRWVSGGKGKRAGVRVIYFHQVKHYEIRLLLIY
RKGIKDDLSPQEKAMLRLLNTRW
Download Length: 312 bp
>T59461 NZ_CP013835:4442116-4442427 [Escherichia coli]
ATGCTCTTCATCGAAACGGAAATTTTTACTGAAGATGTTCAAAAACTGCTGAACGACGATGAATTCAGTCGTTTTCAGTT
TTTCCTGGCCTTGAATCCTGACTATGGTGAGGTAATACCTGAAACTGGTGGGTTAAGAAAGGTTCGATGGGTCTCAGGAG
GAAAGGGGAAACGTGCTGGTGTCAGGGTTATTTACTTTCATCAGGTTAAACATTATGAGATCAGATTACTGCTTATTTAT
CGTAAGGGTATTAAAGATGATCTGTCTCCCCAGGAAAAAGCAATGCTCCGGTTGTTAAATACGAGGTGGTAA
ATGCTCTTCATCGAAACGGAAATTTTTACTGAAGATGTTCAAAAACTGCTGAACGACGATGAATTCAGTCGTTTTCAGTT
TTTCCTGGCCTTGAATCCTGACTATGGTGAGGTAATACCTGAAACTGGTGGGTTAAGAAAGGTTCGATGGGTCTCAGGAG
GAAAGGGGAAACGTGCTGGTGTCAGGGTTATTTACTTTCATCAGGTTAAACATTATGAGATCAGATTACTGCTTATTTAT
CGTAAGGGTATTAAAGATGATCTGTCTCCCCAGGAAAAAGCAATGCTCCGGTTGTTAAATACGAGGTGGTAA
Antitoxin
Download Length: 97 a.a. Molecular weight: 10846.43 Da Isoelectric Point: 10.8907
>AT59461 WP_000356397.1 NZ_CP013835:4442428-4442718 [Escherichia coli]
MDKALFERLTHSMAQMNEIIEGTRQPSRTFEVDAMKIKEIRRASGLSQSKFADLISVSVDTLRNWEQGRRSPTGPAKALL
RAIANDPQHVLQALNR
MDKALFERLTHSMAQMNEIIEGTRQPSRTFEVDAMKIKEIRRASGLSQSKFADLISVSVDTLRNWEQGRRSPTGPAKALL
RAIANDPQHVLQALNR
Download Length: 291 bp
>AT59461 NZ_CP013835:4442428-4442718 [Escherichia coli]
ATGGATAAGGCACTTTTTGAGCGGTTGACTCACAGCATGGCCCAGATGAATGAAATTATTGAAGGAACGCGACAGCCTTC
ACGGACTTTTGAAGTTGATGCTATGAAAATCAAAGAAATACGCCGCGCTTCAGGGTTGTCACAATCTAAATTTGCCGATC
TTATTTCCGTAAGCGTAGACACGTTGCGTAACTGGGAGCAGGGGCGACGTTCACCGACCGGGCCTGCAAAGGCTTTGCTG
CGAGCGATTGCCAATGATCCGCAACATGTGCTGCAAGCACTTAACCGTTAG
ATGGATAAGGCACTTTTTGAGCGGTTGACTCACAGCATGGCCCAGATGAATGAAATTATTGAAGGAACGCGACAGCCTTC
ACGGACTTTTGAAGTTGATGCTATGAAAATCAAAGAAATACGCCGCGCTTCAGGGTTGTCACAATCTAAATTTGCCGATC
TTATTTCCGTAAGCGTAGACACGTTGCGTAACTGGGAGCAGGGGCGACGTTCACCGACCGGGCCTGCAAAGGCTTTGCTG
CGAGCGATTGCCAATGATCCGCAACATGTGCTGCAAGCACTTAACCGTTAG
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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