Detailed information of TA system TA059101

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): higBA (relBE)/HTH(antitoxin)
• Location: 3499070..3499672
• Replicon: chromosome
• Accession: NZ_CP013658
• Organism: Escherichia coli strain uk_P46212

Toxin (Protein)

• Gene name: higB
• Uniprot ID: S1P416
• Locus tag: AUO99_RS18550
• Protein ID: WP_000897302.1
• Coordinates: 3499070..3499381 (+)
• Length: 104 a.a.

Antitoxin (Protein)

• Gene name: higA
• Uniprot ID: -
• Locus tag: AUO99_RS18555
• Protein ID: WP_000356397.1
• Coordinates: 3499382..3499672 (+)
• Length: 97 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
AUO99_RS18525	3494984..3495583	+	600	WP_001296610.1	glucose-1-phosphatase	-
AUO99_RS18530	3495577..3496449	+	873	WP_000920762.1	virulence factor BrkB family protein	-
AUO99_RS18535	3496446..3496883	+	438	WP_000560981.1	D-tyrosyl-tRNA(Tyr) deacylase	-
AUO99_RS18540	3496928..3497869	+	942	WP_001297068.1	fatty acid biosynthesis protein FabY	-
AUO99_RS18545	3497933..3498841	-	909	WP_001385591.1	alpha/beta hydrolase	-
AUO99_RS18550	3499070..3499381	+	312	WP_000897302.1	hypothetical protein	Toxin
AUO99_RS18555	3499382..3499672	+	291	WP_000356397.1	helix-turn-helix domain-containing protein	Antitoxin
AUO99_RS18565	3500031..3500309	+	279	WP_001296612.1	hypothetical protein	-
AUO99_RS18570	3500706..3500924	+	219	WP_001251293.1	ribbon-helix-helix domain-containing protein	-
AUO99_RS18575	3501109..3501558	-	450	WP_032140890.1	hypothetical protein	-
AUO99_RS18580	3501874..3502722	-	849	WP_001038650.1	hypothetical protein	-
AUO99_RS18585	3503012..3503254	+	243	WP_001068514.1	ribbon-helix-helix domain-containing protein	-
AUO99_RS18590	3503436..3504365	-	930	WP_000027696.1	formate dehydrogenase accessory protein FdhE	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

• Cro/C1-type helix-turn-helix domain (36-85)

Sequences

Toxin

Protein

• Length: 104 a.a.
• Molecular weight: 12203.19 Da
• Isoelectric Point: 9.7791

>T59101 WP_000897302.1 NZ_CP013658:3499070-3499381 [Escherichia coli]
MLFIETEIFTEDVQKLLNDDEFSRFQFFLALNPDYGEVIPETGGLRKVRWVSGGKGKRAGVRVIYFHQVKHYEIRLLLIY
RKGIKDDLSPQEKAMLRLLNTRW

Nucleotide

• Length: 312 bp

>T59101 NZ_CP013658:3499070-3499381 [Escherichia coli]
ATGCTCTTCATCGAAACGGAAATTTTTACTGAAGATGTTCAAAAACTGCTGAACGACGATGAATTCAGTCGTTTTCAGTT
TTTCCTGGCCTTGAATCCTGACTATGGTGAGGTAATACCTGAAACTGGTGGGTTAAGAAAGGTTCGATGGGTCTCAGGAG
GAAAGGGGAAACGTGCTGGTGTCAGGGTTATTTACTTTCATCAGGTTAAACATTATGAGATCAGATTACTGCTTATTTAT
CGTAAGGGTATTAAAGATGATCTGTCTCCCCAGGAAAAAGCAATGCTCCGGTTGTTAAATACGAGGTGGTAA

Antitoxin

Protein

• Length: 97 a.a.
• Molecular weight: 10846.43 Da
• Isoelectric Point: 10.8907

>AT59101 WP_000356397.1 NZ_CP013658:3499382-3499672 [Escherichia coli]
MDKALFERLTHSMAQMNEIIEGTRQPSRTFEVDAMKIKEIRRASGLSQSKFADLISVSVDTLRNWEQGRRSPTGPAKALL
RAIANDPQHVLQALNR

Nucleotide

• Length: 291 bp

>AT59101 NZ_CP013658:3499382-3499672 [Escherichia coli]
ATGGATAAGGCACTTTTTGAGCGGTTGACTCACAGCATGGCCCAGATGAATGAAATTATTGAAGGAACGCGACAGCCTTC
ACGGACTTTTGAAGTTGATGCTATGAAAATCAAAGAAATACGCCGCGCTTCAGGGTTGTCACAATCTAAATTTGCCGATC
TTATTTCCGTAAGCGTAGACACGTTGCGTAACTGGGAGCAGGGGCGACGTTCACCGACCGGGCCTGCAAAGGCTTTGCTG
CGAGCGATTGCCAATGATCCGCAACATGTGCTGCAAGCACTTAACCGTTAG

Structures

Toxin

• AlphaFold DB: S1P416