Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 861539..862150 Replicon plasmid pRphaN161d
Accession NZ_CP013589
Organism Rhizobium phaseoli strain N161

Toxin (Protein)


Gene name graT Uniprot ID A0A192TNT1
Locus tag AMC78_RS33175 Protein ID WP_037113455.1
Coordinates 861539..861820 (+) Length 94 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID A0A246TMY6
Locus tag AMC78_RS31090 Protein ID WP_037144436.1
Coordinates 861851..862150 (+) Length 100 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AMC78_RS31070 857097..858506 - 1410 WP_064837701.1 aldehyde dehydrogenase family protein -
AMC78_RS31075 858503..859567 - 1065 WP_004670137.1 homoserine dehydrogenase -
AMC78_RS31080 859801..860268 + 468 WP_004670133.1 Lrp/AsnC family transcriptional regulator -
AMC78_RS31085 860740..861030 - 291 WP_037113457.1 hypothetical protein -
AMC78_RS33175 861539..861820 + 282 WP_037113455.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
AMC78_RS31090 861851..862150 + 300 WP_037144436.1 HigA family addiction module antidote protein Antitoxin
AMC78_RS31095 862411..863304 - 894 WP_064837702.1 amidohydrolase -
AMC78_RS31100 863370..864347 - 978 WP_064837902.1 substrate-binding domain-containing protein -
AMC78_RS31105 864391..865401 - 1011 WP_064837703.1 ABC transporter permease -
AMC78_RS31110 865398..866900 - 1503 WP_064837704.1 sugar ABC transporter ATP-binding protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Conjugative plasmid - gmd 1..1048055 1048055


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-1

(4-93)

Antitoxin

Toxin-antitoxin system, antidote protein, HigA

(6-80)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10455.94 Da        Isoelectric Point: 9.1204

>T58993 WP_037113455.1 NZ_CP013589:861539-861820 [Rhizobium phaseoli]
VIRSFKDAKTEAVARGKAPKGFPSDIVRSAIRKLTILNSVAVLEDLRSPPGNRLEALKGNREGQHSIRINDQWRICFVWT
DAGIEDVEIVDYH

Download         Length: 282 bp

>T58993 NZ_CP013589:861539-861820 [Rhizobium phaseoli]
GTGATCAGGTCATTCAAGGACGCCAAAACCGAAGCCGTCGCGCGGGGCAAAGCACCAAAAGGATTTCCTTCTGACATCGT
GAGGTCTGCCATTCGGAAATTGACGATCCTGAACAGCGTTGCCGTGCTTGAGGACCTGCGTTCTCCTCCGGGAAATCGAT
TAGAAGCCCTTAAGGGCAATAGGGAAGGCCAGCATTCGATCCGGATCAATGATCAGTGGCGAATCTGTTTCGTATGGACA
GATGCCGGTATCGAAGACGTCGAAATAGTTGACTACCATTGA

Antitoxin


Download         Length: 100 a.a.        Molecular weight: 11344.19 Da        Isoelectric Point: 6.2263

>AT58993 WP_037144436.1 NZ_CP013589:861851-862150 [Rhizobium phaseoli]
MTHILPPVHPGEILREEYLLPLNMSAGALAKKLNVPRTRIERIAAEQTPITTDTALRLAKYFRTTPEFWMNMQTSFNLKT
EEMALHSELELIPEIDRAA

Download         Length: 300 bp

>AT58993 NZ_CP013589:861851-862150 [Rhizobium phaseoli]
ATGACCCATATACTTCCGCCGGTCCATCCGGGCGAAATTCTCCGCGAGGAATACCTACTTCCTCTGAACATGAGCGCCGG
CGCACTGGCGAAAAAGCTTAATGTTCCTCGCACGCGCATCGAACGTATAGCGGCGGAGCAAACACCGATTACGACGGATA
CCGCACTGCGCCTTGCAAAGTACTTCCGCACAACGCCGGAATTTTGGATGAACATGCAGACAAGCTTCAACCTCAAGACA
GAAGAAATGGCACTTCATAGCGAATTGGAGCTTATCCCGGAAATCGATAGAGCGGCATAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A192TNT1

Antitoxin

Source ID Structure
AlphaFold DB A0A246TMY6

References