Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/HigB-HigA |
Location | 709625..710218 | Replicon | chromosome |
Accession | NZ_CP013371 | ||
Organism | Burkholderia ubonensis strain RF23-BP41 |
Toxin (Protein)
Gene name | graT | Uniprot ID | - |
Locus tag | WI31_RS24765 | Protein ID | WP_059654532.1 |
Coordinates | 709940..710218 (-) | Length | 93 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | - |
Locus tag | WI31_RS24760 | Protein ID | WP_088501618.1 |
Coordinates | 709625..709927 (-) | Length | 101 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
WI31_RS24735 | 704872..706143 | + | 1272 | WP_059654471.1 | Rieske 2Fe-2S domain-containing protein | - |
WI31_RS24740 | 706158..706634 | + | 477 | WP_059618175.1 | aromatic-ring-hydroxylating dioxygenase subunit beta | - |
WI31_RS24745 | 706654..706980 | + | 327 | WP_059654469.1 | non-heme iron oxygenase ferredoxin subunit | - |
WI31_RS24750 | 706970..708190 | + | 1221 | WP_059618177.1 | FAD-dependent oxidoreductase | - |
WI31_RS24755 | 708282..709568 | + | 1287 | WP_059654468.1 | DUF445 family protein | - |
WI31_RS24760 | 709625..709927 | - | 303 | WP_088501618.1 | HigA family addiction module antidote protein | Antitoxin |
WI31_RS24765 | 709940..710218 | - | 279 | WP_059654532.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
WI31_RS24770 | 710601..710900 | - | 300 | WP_010089041.1 | putative addiction module antidote protein | - |
WI31_RS24775 | 710904..711221 | - | 318 | WP_059654467.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
WI31_RS24780 | 711664..713304 | + | 1641 | WP_059618185.1 | acetolactate synthase large subunit | - |
WI31_RS24785 | 713334..714767 | + | 1434 | WP_059618187.1 | aldehyde dehydrogenase family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10654.04 Da Isoelectric Point: 7.8922
>T58515 WP_059654532.1 NZ_CP013371:c710218-709940 [Burkholderia ubonensis]
MIRSFRCKDTQSLFAGESPKRFRTIESVAARKLEMVAAAKELRDLRSPPGNRLEALHGNRDGQHSIRINEQWRICFEWTD
DGPANVEILDYH
MIRSFRCKDTQSLFAGESPKRFRTIESVAARKLEMVAAAKELRDLRSPPGNRLEALHGNRDGQHSIRINEQWRICFEWTD
DGPANVEILDYH
Download Length: 279 bp
>T58515 NZ_CP013371:c710218-709940 [Burkholderia ubonensis]
ATGATCAGATCGTTCCGATGCAAAGATACCCAGTCGCTTTTCGCCGGCGAATCACCCAAACGCTTCCGTACGATCGAATC
CGTTGCTGCCCGGAAACTGGAAATGGTCGCTGCTGCGAAAGAACTGCGCGACTTGCGGTCTCCGCCCGGCAACCGGCTGG
AAGCGCTGCACGGCAATCGGGATGGCCAGCACAGCATCCGTATCAATGAGCAATGGCGGATCTGCTTCGAGTGGACCGAC
GACGGCCCCGCCAACGTCGAGATCCTTGACTATCACTGA
ATGATCAGATCGTTCCGATGCAAAGATACCCAGTCGCTTTTCGCCGGCGAATCACCCAAACGCTTCCGTACGATCGAATC
CGTTGCTGCCCGGAAACTGGAAATGGTCGCTGCTGCGAAAGAACTGCGCGACTTGCGGTCTCCGCCCGGCAACCGGCTGG
AAGCGCTGCACGGCAATCGGGATGGCCAGCACAGCATCCGTATCAATGAGCAATGGCGGATCTGCTTCGAGTGGACCGAC
GACGGCCCCGCCAACGTCGAGATCCTTGACTATCACTGA
Antitoxin
Download Length: 101 a.a. Molecular weight: 11615.36 Da Isoelectric Point: 8.5562
>AT58515 WP_088501618.1 NZ_CP013371:c709927-709625 [Burkholderia ubonensis]
MLKNGMRPIHPGEILREEFLTPLEMSVNALALALNVPATRLHEIVKERRGVTADTAYRLARYFDTSPEFWLNLQATYDLK
TLPTRNEIDRKVEPRERTHA
MLKNGMRPIHPGEILREEFLTPLEMSVNALALALNVPATRLHEIVKERRGVTADTAYRLARYFDTSPEFWLNLQATYDLK
TLPTRNEIDRKVEPRERTHA
Download Length: 303 bp
>AT58515 NZ_CP013371:c709927-709625 [Burkholderia ubonensis]
ATGCTCAAGAATGGAATGCGTCCGATCCACCCGGGCGAAATCCTGCGAGAGGAATTCCTGACGCCGCTGGAGATGAGTGT
CAACGCGCTTGCACTCGCGTTGAACGTACCGGCTACCCGCCTGCATGAAATCGTCAAGGAACGGCGCGGGGTCACGGCCG
ATACCGCTTACCGGCTCGCACGCTACTTCGACACGTCACCCGAATTCTGGCTGAACCTGCAAGCCACGTACGACCTCAAA
ACGCTGCCGACGCGCAATGAGATCGACCGGAAGGTTGAACCGCGCGAACGCACGCACGCATAG
ATGCTCAAGAATGGAATGCGTCCGATCCACCCGGGCGAAATCCTGCGAGAGGAATTCCTGACGCCGCTGGAGATGAGTGT
CAACGCGCTTGCACTCGCGTTGAACGTACCGGCTACCCGCCTGCATGAAATCGTCAAGGAACGGCGCGGGGTCACGGCCG
ATACCGCTTACCGGCTCGCACGCTACTTCGACACGTCACCCGAATTCTGGCTGAACCTGCAAGCCACGTACGACCTCAAA
ACGCTGCCGACGCGCAATGAGATCGACCGGAAGGTTGAACCGCGCGAACGCACGCACGCATAG
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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