Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/Tad-HTH_37
Location 4760087..4760720 Replicon chromosome
Accession NZ_CP013232
Organism Collimonas fungivorans strain Ter6

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag CFter6_RS20890 Protein ID WP_205631413.1
Coordinates 4760388..4760720 (-) Length 111 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID A0A127R352
Locus tag CFter6_RS20885 Protein ID WP_041742396.1
Coordinates 4760087..4760371 (-) Length 95 a.a.

Genomic Context

CFter6_RS20875CFter6_RS20880CFter6_RS20885CFter6_RS20890CFter6_RS20895CFter6_RS20900CFter6_RS20905
Location: 4755399..4757621 (2223 bp)
Type: Others
Protein ID: WP_061541550.1
Location: 4758167..4759693 (1527 bp)
Type: Others
Protein ID: WP_061541551.1
Location: 4760087..4760371 (285 bp)
Type: Antitoxin
Protein ID: WP_041742396.1
Location: 4760388..4760720 (333 bp)
Type: Toxin
Protein ID: WP_205631413.1
Location: 4761015..4761377 (363 bp)
Type: Others
Protein ID: WP_061541552.1
Location: 4761794..4762801 (1008 bp)
Type: Others
Protein ID: WP_061542507.1
Location: 4763190..4764137 (948 bp)
Type: Others
Protein ID: WP_061541553.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
CFter6_RS208754755399..4757621-2223WP_061541550.1type I secretion system permease/ATPase-
CFter6_RS208804758167..4759693-1527WP_061541551.1hypothetical protein-
CFter6_RS208854760087..4760371-285WP_041742396.1helix-turn-helix domain-containing proteinAntitoxin
CFter6_RS208904760388..4760720-333WP_205631413.1type II toxin-antitoxin system RelE/ParE family toxinToxin
CFter6_RS208954761015..4761377-363WP_061541552.1hypothetical protein-
CFter6_RS209004761794..4762801-1008WP_061542507.1DUF475 domain-containing protein-
CFter6_RS209054763190..4764137-948WP_061541553.1OmpA family protein-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(16-103)

Antitoxin

Cro/C1-type helix-turn-helix domain

(32-90)


Sequences

Toxin        


Download         Length: 111 a.a.        Molecular weight: 12728.11 Da        Isoelectric Point: 10.4134

>T58159 WP_205631413.1 NZ_CP013232:c4760720-4760388 [Collimonas fungivorans]
MIEYQVSYYSQQIQADIMSLPATLQARYLSLTARMKIYGPHLGEPHTKVLGNGLLELRLKGAEGIARVFYCTMVGKQIVM
LHSFVKKTQKIPFKEKRIAEIRMREVKNER

Download         Length: 333 bp

>T58159 NZ_CP013232:c4760720-4760388 [Collimonas fungivorans]
ATGATCGAATATCAGGTTAGTTACTATAGCCAACAGATCCAGGCAGACATTATGTCCTTGCCGGCAACGCTGCAGGCACG
CTATCTCAGCTTGACCGCCAGAATGAAGATTTACGGCCCTCATTTGGGGGAGCCTCATACCAAGGTGCTTGGCAATGGCT
TGCTTGAGTTACGCTTGAAGGGCGCGGAAGGCATTGCCCGTGTTTTTTATTGCACGATGGTCGGGAAGCAGATTGTCATG
CTGCACAGTTTCGTCAAGAAGACACAAAAAATTCCTTTTAAGGAAAAACGGATTGCAGAAATTCGCATGAGGGAAGTTAA
AAATGAGCGCTAA

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10397.00 Da        Isoelectric Point: 9.7320

>AT58159 WP_041742396.1 NZ_CP013232:c4760371-4760087 [Collimonas fungivorans]
MTHEEMQARMLQNPVVQAEYERLNREEFAILDEILAARKAAGLTQAQIAERMGTKAPAVARLESSLASGKHSPSINTLRK
YAAALGKRLEVHLV

Download         Length: 285 bp

>AT58159 NZ_CP013232:c4760371-4760087 [Collimonas fungivorans]
ATGACGCATGAAGAAATGCAGGCTCGGATGCTGCAGAATCCCGTTGTCCAGGCTGAATACGAACGCTTGAATCGCGAGGA
GTTTGCCATTCTTGACGAAATTTTAGCGGCACGCAAAGCGGCTGGACTCACCCAGGCACAGATTGCCGAACGTATGGGAA
CCAAGGCGCCAGCCGTGGCGCGCCTGGAAAGTTCATTAGCTTCGGGTAAGCACTCTCCTAGCATCAATACATTACGCAAA
TATGCGGCAGCGCTTGGAAAACGCCTCGAAGTGCATCTGGTGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
AlphaFold DBA0A127R352

References