58115

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-RelB
Location 1956632..1957145 Replicon chromosome
Accession NZ_CP013202
Organism Streptococcus agalactiae strain GBS ST-1

Toxin (Protein)


Gene name yoeB Uniprot ID Q8DX49
Locus tag AOY37_RS09840 Protein ID WP_000481712.1
Coordinates 1956632..1956886 (-) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID Q8DX48
Locus tag AOY37_RS09845 Protein ID WP_000387490.1
Coordinates 1956879..1957145 (-) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AOY37_RS09820 1952403..1954904 - 2502 WP_000239404.1 ATP-binding protein -
AOY37_RS09825 1954925..1955335 - 411 WP_000390749.1 conjugal transfer protein -
AOY37_RS09830 1955339..1955605 - 267 WP_001055037.1 hypothetical protein -
AOY37_RS09835 1955626..1956579 - 954 WP_000565541.1 conjugal transfer protein -
AOY37_RS09840 1956632..1956886 - 255 WP_000481712.1 Txe/YoeB family addiction module toxin Toxin
AOY37_RS09845 1956879..1957145 - 267 WP_000387490.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
AOY37_RS09850 1957290..1957763 - 474 WP_000560386.1 hypothetical protein -
AOY37_RS09855 1957771..1958253 - 483 WP_000383283.1 antirestriction protein ArdA -
AOY37_RS09860 1958306..1958578 - 273 WP_000072643.1 hypothetical protein -
AOY37_RS09865 1958710..1959063 - 354 WP_000571928.1 helix-turn-helix domain-containing protein -
AOY37_RS09870 1959056..1959286 - 231 WP_001866982.1 helix-turn-helix domain-containing protein -
AOY37_RS09875 1959273..1959650 - 378 WP_000287185.1 hypothetical protein -
AOY37_RS09880 1959666..1960898 - 1233 WP_000338839.1 replication initiation factor domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Integrative and Conjugative Element - cfa/cfb 1944377..2009406 65029


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(4-83)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10445.87 Da        Isoelectric Point: 6.7282

>T58115 WP_000481712.1 NZ_CP013202:c1956886-1956632 [Streptococcus agalactiae]
MFNFTEEAWKDYVSWQQEDKKILKRINRLIEDIKRDPFEGIGKPEPLKYHYSGAWSRRITEEHRLIYMIEDGEIYFLSFR
DHYK

Download         Length: 255 bp

>T58115 NZ_CP013202:c1956886-1956632 [Streptococcus agalactiae]
ATGTTTAATTTTACTGAAGAAGCATGGAAAGATTATGTTTCTTGGCAACAGGAAGATAAAAAAATCTTGAAACGAATTAA
TCGTTTGATAGAAGATATTAAAAGAGACCCATTTGAAGGCATTGGAAAACCAGAACCTTTAAAATACCATTATTCAGGGG
CTTGGTCTCGAAGAATTACAGAAGAACATAGGTTGATTTATATGATAGAAGATGGAGAAATCTATTTTTTATCTTTTAGA
GATCATTATAAGTAG

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10316.70 Da        Isoelectric Point: 4.6742

>AT58115 WP_000387490.1 NZ_CP013202:c1957145-1956879 [Streptococcus agalactiae]
MEAIVYSHFRNNLKDYMKKVNDEFEPLIVVNKNPDENIVVLSQDSWESLQETIRLMENDYLSHKVINGISQVKEKQVTKH
GLIEVEDV

Download         Length: 267 bp

>AT58115 NZ_CP013202:c1957145-1956879 [Streptococcus agalactiae]
ATGGAGGCTATTGTTTATTCACATTTTAGAAATAATTTAAAAGATTATATGAAGAAGGTCAATGATGAATTTGAGCCTTT
GATTGTAGTTAATAAAAATCCTGATGAAAATATAGTGGTTTTATCTCAAGATAGCTGGGAAAGTTTACAAGAAACGATTC
GTTTGATGGAAAATGATTATCTATCACATAAGGTTATTAATGGTATATCACAAGTTAAAGAGAAGCAAGTCACTAAACAT
GGTTTAATTGAGGTAGAAGATGTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829IC12

Antitoxin

Source ID Structure
AlphaFold DB A0A829I9V6

References