Detailed information of TA system TA056352

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): higBA (relBE)/HTH(antitoxin)
• Location: 4300218..4300820
• Replicon: chromosome
• Accession: NZ_CP012376
• Organism: Escherichia coli strain GE3

Toxin (Protein)

• Gene name: higB
• Uniprot ID: U9XIS6
• Locus tag: AKN41_RS21055
• Protein ID: WP_000897305.1
• Coordinates: 4300218..4300529 (+)
• Length: 104 a.a.

Antitoxin (Protein)

• Gene name: higA
• Uniprot ID: -
• Locus tag: AKN41_RS21060
• Protein ID: WP_000356397.1
• Coordinates: 4300530..4300820 (+)
• Length: 97 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
AKN41_RS21030	4296132..4296731	+	600	WP_001295269.1	glucose-1-phosphatase	-
AKN41_RS21035	4296725..4297597	+	873	WP_000920762.1	virulence factor BrkB family protein	-
AKN41_RS21040	4297594..4298031	+	438	WP_000560983.1	D-tyrosyl-tRNA(Tyr) deacylase	-
AKN41_RS21045	4298076..4299017	+	942	WP_001297068.1	fatty acid biosynthesis protein FabY	-
AKN41_RS21050	4299081..4299989	-	909	WP_001162704.1	alpha/beta hydrolase	-
AKN41_RS21055	4300218..4300529	+	312	WP_000897305.1	hypothetical protein	Toxin
AKN41_RS21060	4300530..4300820	+	291	WP_000356397.1	helix-turn-helix domain-containing protein	Antitoxin
AKN41_RS21065	4301425..4301643	+	219	WP_001295676.1	ribbon-helix-helix domain-containing protein	-
AKN41_RS21070	4301862..4302104	+	243	WP_001087409.1	hypothetical protein	-
AKN41_RS21075	4302434..4303363	-	930	WP_000027706.1	formate dehydrogenase accessory protein FdhE	-
AKN41_RS21080	4303360..4303995	-	636	WP_000829013.1	formate dehydrogenase cytochrome b556 subunit	-
AKN41_RS21085	4303992..4304894	-	903	WP_106913393.1	formate dehydrogenase O subunit beta	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

• Cro/C1-type helix-turn-helix domain (36-85)

Sequences

Toxin

Protein

• Length: 104 a.a.
• Molecular weight: 12190.19 Da
• Isoelectric Point: 9.7791

>T56352 WP_000897305.1 NZ_CP012376:4300218-4300529 [Escherichia coli]
MLFIETEIFTEDVQKLLTDDEFSRFQFFLALNPDYGEVIPETGGLRKVRWVSGGKGKRAGVRVIYFHQVKHYEIRLLLIY
RKGIKDDLSPQEKAMLRLLNTRW

Nucleotide

• Length: 312 bp

>T56352 NZ_CP012376:4300218-4300529 [Escherichia coli]
ATGCTCTTCATCGAAACGGAAATTTTTACTGAAGATGTTCAAAAACTGCTGACCGACGATGAATTCAGTCGTTTTCAGTT
TTTCCTGGCCTTGAATCCTGACTATGGTGAGGTAATACCTGAAACTGGTGGGTTAAGAAAGGTTCGATGGGTTTCAGGAG
GAAAGGGGAAACGTGCTGGTGTCAGGGTTATTTACTTTCATCAGGTTAAACATTATGAGATCAGATTACTGCTTATTTAT
CGTAAGGGTATTAAAGATGATCTGTCTCCCCAGGAAAAAGCAATGCTCCGGTTGTTAAATACGAGGTGGTAA

Antitoxin

Protein

• Length: 97 a.a.
• Molecular weight: 10846.43 Da
• Isoelectric Point: 10.8907

>AT56352 WP_000356397.1 NZ_CP012376:4300530-4300820 [Escherichia coli]
MDKALFERLTHSMAQMNEIIEGTRQPSRTFEVDAMKIKEIRRASGLSQSKFADLISVSVDTLRNWEQGRRSPTGPAKALL
RAIANDPQHVLQALNR

Nucleotide

• Length: 291 bp

>AT56352 NZ_CP012376:4300530-4300820 [Escherichia coli]
ATGGATAAGGCACTTTTTGAGCGGTTGACTCACAGCATGGCCCAGATGAATGAAATTATTGAAGGAACGCGACAGCCTTC
GCGGACTTTTGAAGTTGATGCTATGAAAATCAAAGAAATACGCCGCGCTTCAGGGTTGTCACAATCTAAATTTGCCGATC
TTATTTCTGTAAGCGTAGACACGTTGCGTAACTGGGAGCAGGGGCGACGTTCACCGACCGGGCCTGCAAAGGCTTTGCTG
CGAGCGATTGCCAATGATCCGCAACATGTGCTGCAAGCACTTAACCGTTAG

Structures

Toxin

• AlphaFold DB: A0A0E0Y7I7