Detailed information of TA system TA055589

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): higBA (relBE)/HigB-HigA
• Location: 5154952..5155400
• Replicon: chromosome
• Accession: NZ_CP012063
• Organism: Xanthomonas phaseoli pv. phaseoli strain ISO18C8

Toxin (Protein)

• Gene name: graT
• Uniprot ID: -
• Locus tag: AC610_RS24930
• Protein ID: WP_201417376.1
• Coordinates: 5155260..5155400 (-)
• Length: 47 a.a.

Antitoxin (Protein)

• Gene name: higA
• Uniprot ID: -
• Locus tag: AC610_RS23650
• Protein ID: WP_017156025.1
• Coordinates: 5154952..5155242 (-)
• Length: 97 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
AC610_RS23620	5150287..5150619	+	333	WP_003482333.1	hypothetical protein	-
AC610_RS23630	5150934..5152859	+	1926	WP_039574551.1	M61 family metallopeptidase	-
AC610_RS24925	5152927..5153106	+	180	WP_039574549.1	hypothetical protein	-
AC610_RS23640	5153209..5154597	-	1389	WP_039574546.1	nucleoside hydrolase	-
AC610_RS23650	5154952..5155242	-	291	WP_017156025.1	HigA family addiction module antidote protein	Antitoxin
AC610_RS24930	5155260..5155400	-	141	WP_201417376.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
AC610_RS23660	5155638..5158145	-	2508	WP_046834789.1	AAA family ATPase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Integrative and Conjugative Element	-	-	5108926..5179281	70355

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin HigB-1 (1-46)

Antitoxin

• Toxin-antitoxin system, antidote protein, HigA (1-94)

Sequences

Toxin

Protein

• Length: 47 a.a.
• Molecular weight: 5621.49 Da
• Isoelectric Point: 9.1269

>T55589 WP_201417376.1 NZ_CP012063:c5155400-5155260 [Xanthomonas phaseoli pv. phaseoli]
IPPANRLEALKGERRGQYRIRINDRWRICVRWMEGDVVQVEIIDYH

Nucleotide

• Length: 141 bp

>T55589 NZ_CP012063:c5155400-5155260 [Xanthomonas phaseoli pv. phaseoli]
ATCCCGCCCGCCAACCGGCTGGAAGCGTTGAAGGGCGAGCGGCGCGGCCAGTACCGCATCCGGATCAACGATCGATGGCG
CATCTGCGTCCGATGGATGGAAGGCGATGTGGTCCAGGTCGAAATCATCGATTACCACTGA

Antitoxin

Protein

• Length: 97 a.a.
• Molecular weight: 10387.09 Da
• Isoelectric Point: 9.0188

>AT55589 WP_017156025.1 NZ_CP012063:c5155242-5154952 [Xanthomonas phaseoli pv. phaseoli]
MTVLPNIHPGAILLEEFLQPLGISQNALARATGVPPRRINEIVLGKRGITADTAVRLAAALGTFERFWLGLQADDELEQA
HRALGDLPARIKRLAA

Nucleotide

• Length: 291 bp

>AT55589 NZ_CP012063:c5155242-5154952 [Xanthomonas phaseoli pv. phaseoli]
ATGACGGTCCTGCCCAATATCCACCCTGGCGCAATTCTGCTTGAGGAGTTTCTCCAGCCTCTGGGCATCAGCCAGAACGC
ACTGGCACGCGCCACCGGCGTCCCGCCGCGCCGTATCAACGAAATCGTGCTGGGCAAGCGCGGCATCACTGCCGACACTG
CCGTGCGTCTGGCCGCCGCGTTGGGAACCTTCGAGCGCTTCTGGCTTGGCCTGCAGGCCGACGACGAGCTGGAGCAGGCG
CATCGCGCGCTGGGCGACTTGCCGGCGCGGATCAAGCGGCTGGCGGCATGA