Detailed information of TA system TA055581

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): higBA (relBE)/HigB-HigA
• Location: 5157052..5157500
• Replicon: chromosome
• Accession: NZ_CP012057
• Organism: Xanthomonas phaseoli pv. phaseoli strain ISO98C12

Toxin (Protein)

• Gene name: graT
• Uniprot ID: -
• Locus tag: AC611_RS24970
• Protein ID: WP_201417376.1
• Coordinates: 5157360..5157500 (-)
• Length: 47 a.a.

Antitoxin (Protein)

• Gene name: higA
• Uniprot ID: -
• Locus tag: AC611_RS23670
• Protein ID: WP_017156025.1
• Coordinates: 5157052..5157342 (-)
• Length: 97 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
AC611_RS23640	5152387..5152719	+	333	WP_003482333.1	hypothetical protein	-
AC611_RS23650	5153034..5154959	+	1926	WP_039574551.1	M61 family metallopeptidase	-
AC611_RS24965	5155027..5155206	+	180	WP_039574549.1	hypothetical protein	-
AC611_RS23660	5155309..5156697	-	1389	WP_039574546.1	nucleoside hydrolase	-
AC611_RS23670	5157052..5157342	-	291	WP_017156025.1	HigA family addiction module antidote protein	Antitoxin
AC611_RS24970	5157360..5157500	-	141	WP_201417376.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
AC611_RS23680	5157738..5160245	-	2508	WP_046834789.1	AAA family ATPase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Integrative and Conjugative Element	-	-	5111026..5181381	70355

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin HigB-1 (1-46)

Antitoxin

• Toxin-antitoxin system, antidote protein, HigA (1-94)

Sequences

Toxin

Protein

• Length: 47 a.a.
• Molecular weight: 5621.49 Da
• Isoelectric Point: 9.1269

>T55581 WP_201417376.1 NZ_CP012057:c5157500-5157360 [Xanthomonas phaseoli pv. phaseoli]
IPPANRLEALKGERRGQYRIRINDRWRICVRWMEGDVVQVEIIDYH

Nucleotide

• Length: 141 bp

>T55581 NZ_CP012057:c5157500-5157360 [Xanthomonas phaseoli pv. phaseoli]
ATCCCGCCCGCCAACCGGCTGGAAGCGTTGAAGGGCGAGCGGCGCGGCCAGTACCGCATCCGGATCAACGATCGATGGCG
CATCTGCGTCCGATGGATGGAAGGCGATGTGGTCCAGGTCGAAATCATCGATTACCACTGA

Antitoxin

Protein

• Length: 97 a.a.
• Molecular weight: 10387.09 Da
• Isoelectric Point: 9.0188

>AT55581 WP_017156025.1 NZ_CP012057:c5157342-5157052 [Xanthomonas phaseoli pv. phaseoli]
MTVLPNIHPGAILLEEFLQPLGISQNALARATGVPPRRINEIVLGKRGITADTAVRLAAALGTFERFWLGLQADDELEQA
HRALGDLPARIKRLAA

Nucleotide

• Length: 291 bp

>AT55581 NZ_CP012057:c5157342-5157052 [Xanthomonas phaseoli pv. phaseoli]
ATGACGGTCCTGCCCAATATCCACCCTGGCGCAATTCTGCTTGAGGAGTTTCTCCAGCCTCTGGGCATCAGCCAGAACGC
ACTGGCACGCGCCACCGGCGTCCCGCCGCGCCGTATCAACGAAATCGTGCTGGGCAAGCGCGGCATCACTGCCGACACTG
CCGTGCGTCTGGCCGCCGCGTTGGGAACCTTCGAGCGCTTCTGGCTTGGCCTGCAGGCCGACGACGAGCTGGAGCAGGCG
CATCGCGCGCTGGGCGACTTGCCGGCGCGGATCAAGCGGCTGGCGGCATGA