Detailed information of TA system TA055274

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): rlegTA/AbiEii-AbiEi
• Location: 2099218..2100671
• Replicon: chromosome
• Accession: NZ_CP011962
• Organism: Xanthomonas oryzae pv. oryzicola strain CFBP2286

Toxin (Protein)

• Gene name: rlegT
• Uniprot ID: G7TCM5
• Locus tag: ACU11_RS09185
• Protein ID: WP_014503028.1
• Coordinates: 2099820..2100671 (+)
• Length: 284 a.a.

Antitoxin (Protein)

• Gene name: rlegA
• Uniprot ID: G7TCM4
• Locus tag: ACU11_RS09180
• Protein ID: WP_014503027.1
• Coordinates: 2099218..2099823 (+)
• Length: 202 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
ACU11_RS09165	2095744..2096253	+	510	WP_014503022.1	chemotaxis protein CheW	-
ACU11_RS09170	2096296..2097381	-	1086	WP_014503023.1	sensor domain-containing diguanylate cyclase	-
ACU11_RS25715	2097687..2097863	-	177	WP_014503024.1	hypothetical protein	-
ACU11_RS23180	2098189..2098974	+	786	WP_014503026.1	helix-turn-helix domain-containing protein	-
ACU11_RS09180	2099218..2099823	+	606	WP_014503027.1	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	Antitoxin
ACU11_RS09185	2099820..2100671	+	852	WP_014503028.1	nucleotidyl transferase AbiEii/AbiGii toxin family protein	Toxin
ACU11_RS25200	2100830..2101102	-	273	WP_014503029.1	hypothetical protein	-
ACU11_RS09195	2101365..2102931	+	1567	Protein_1813	recombinase family protein	-
ACU11_RS09200	2102928..2103269	+	342	WP_014503031.1	ParB N-terminal domain-containing protein	-
ACU11_RS09210	2104142..2104444	+	303	WP_014503032.1	hypothetical protein	-
ACU11_RS09215	2104669..2105631	+	963	WP_041183219.1	IS110 family transposase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	Similar MGE(s) Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE. Detail Genome accession Organism MGE type Related TA Coordinates Mash distance View NC_017267 Xanthomonas oryzae pv. oryzicola BLS256 IS/Tn TA026407 2063708..2064670 0	flank	IS/Tn	-	-	2104669..2105631	962

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Nucleotidyl transferase AbiEii toxin, Type IV TA system (34-262)

Antitoxin

• Transcriptional regulator, AbiEi antitoxin (8-55)

Sequences

Toxin

Protein

• Length: 284 a.a.
• Molecular weight: 31030.87 Da
• Isoelectric Point: 7.0657

>T55274 WP_014503028.1 NZ_CP011962:2099820-2100671 [Xanthomonas oryzae pv. oryzicola]
MSNVAASVRARLRGVAKAQGVDFNQVLVRFALERILYRLSQSEHADRFLLKGALLFTLWYDMPHRATRDADLLGFGASDL
ESVAQTFRDIASVAVDDGIVFDPASVVAEEIRKDAGYAGARILIGGELAKARCRTQIDVGFGDAVTPAPVHSVYPVLLED
LPAPRLRTYPVYTVIAEKLHAIALLGMTNSRMKDYLDLSVLLERESLDIDLLAQAVKATFERRGMAVAAALPIGMTDEFA
HDTSRQALWQAFLKKNELAPEPLAAIVVRLRAALEPALHRAAR

Nucleotide

• Length: 852 bp

>T55274 NZ_CP011962:2099820-2100671 [Xanthomonas oryzae pv. oryzicola]
ATGAGCAACGTCGCCGCTTCCGTGCGCGCCCGCCTGCGGGGCGTCGCCAAGGCGCAGGGCGTGGATTTCAATCAGGTGCT
GGTGCGCTTCGCGCTGGAGCGCATCCTTTACCGCCTGAGCCAGTCCGAGCACGCGGATCGTTTCCTGCTCAAGGGCGCGC
TGCTGTTCACGCTCTGGTATGACATGCCGCACCGGGCCACGCGCGACGCCGACCTGCTGGGCTTCGGCGCGAGCGATCTG
GAGTCCGTGGCCCAGACCTTCCGCGACATCGCCAGCGTCGCCGTGGACGACGGCATCGTGTTCGACCCGGCCTCGGTCGT
CGCAGAAGAAATTCGCAAGGACGCCGGATACGCCGGGGCGCGCATCCTCATCGGCGGCGAGCTGGCCAAGGCGCGGTGCA
GGACGCAGATCGACGTTGGCTTCGGCGATGCGGTCACACCGGCTCCGGTGCACTCGGTCTATCCGGTGTTGCTGGAAGAT
CTGCCTGCGCCTCGCCTGCGCACCTATCCCGTCTACACCGTCATCGCGGAAAAGCTCCACGCCATCGCGCTTCTGGGTAT
GACCAACAGTCGGATGAAGGATTACCTCGACCTGTCGGTGCTGCTGGAACGTGAATCCCTGGACATCGATCTGCTGGCGC
AAGCGGTGAAGGCCACTTTCGAGCGACGCGGCATGGCCGTGGCCGCTGCTCTGCCGATCGGCATGACCGACGAGTTCGCG
CACGACACGTCTCGGCAGGCGCTGTGGCAGGCATTCCTCAAGAAGAACGAACTCGCCCCCGAACCCCTGGCTGCCATCGT
GGTTCGACTGCGGGCGGCCTTGGAACCAGCGTTGCACCGGGCTGCTCGATGA

Antitoxin

Protein

• Length: 202 a.a.
• Molecular weight: 22228.93 Da
• Isoelectric Point: 10.0752

>AT55274 WP_014503027.1 NZ_CP011962:2099218-2099823 [Xanthomonas oryzae pv. oryzicola]
MLSDTHTQRVLDLASQKGLLRASNLDAINAPRVVLTRLTAAGVLERVGRGLYRLPDAQGSEFESLAAIATKVPQAVFCLL
TALQFHELTTQLPRQIWIAMPRGSHAPRIGYPPVKMVQMTGDVYAAGIEEHLRDGVKLRVYGAAKTVVDCFKHRNKIGLD
VALEALKDVRAKRKATADDLWRFATVCRVANVMRPYLEAVE

Nucleotide

• Length: 606 bp

>AT55274 NZ_CP011962:2099218-2099823 [Xanthomonas oryzae pv. oryzicola]
ATGCTTTCCGACACCCACACCCAGCGCGTCCTCGATCTGGCCAGCCAGAAAGGACTGCTGCGCGCCAGCAATCTGGACGC
CATCAATGCGCCCCGGGTCGTTCTCACGCGCCTGACCGCCGCTGGCGTTCTGGAAAGGGTCGGACGCGGGCTGTACCGCC
TGCCGGACGCGCAGGGATCGGAATTCGAGAGTCTCGCGGCCATCGCCACCAAGGTGCCACAAGCCGTGTTCTGCCTGCTG
ACTGCGCTGCAGTTCCACGAACTGACCACGCAACTGCCGCGCCAGATCTGGATCGCCATGCCGCGCGGCAGTCACGCGCC
CCGGATCGGCTATCCGCCGGTCAAGATGGTTCAGATGACCGGCGACGTCTACGCTGCAGGCATCGAGGAGCACCTGCGCG
ACGGCGTGAAGCTGCGCGTGTACGGTGCGGCCAAGACGGTCGTGGACTGCTTCAAGCACCGCAACAAGATCGGCCTGGAC
GTGGCGCTGGAGGCGCTGAAGGACGTGCGCGCCAAACGCAAGGCCACTGCGGACGACCTGTGGCGCTTTGCTACGGTCTG
CCGCGTGGCCAACGTGATGCGCCCCTATCTGGAGGCGGTCGAATGA

Structures

Toxin

• AlphaFold DB: G7TCM5

Antitoxin

• AlphaFold DB: G7TCM4