Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) rlegTA/AbiEii-AbiEi
Location 2058257..2059710 Replicon chromosome
Accession NC_017267
Organism Xanthomonas oryzae pv. oryzicola BLS256

Toxin (Protein)


Gene name rlegT Uniprot ID G7TCM5
Locus tag XOC_RS08950 Protein ID WP_014503028.1
Coordinates 2058859..2059710 (+) Length 284 a.a.

Antitoxin (Protein)


Gene name rlegA Uniprot ID G7TCM4
Locus tag XOC_RS08945 Protein ID WP_014503027.1
Coordinates 2058257..2058862 (+) Length 202 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
XOC_RS08930 (XOC_2049) 2054783..2055292 + 510 WP_014503022.1 chemotaxis protein CheW -
XOC_RS08935 (XOC_2050) 2055335..2056420 - 1086 WP_014503023.1 sensor domain-containing diguanylate cyclase -
XOC_RS25415 (XOC_2051) 2056726..2056902 - 177 WP_014503024.1 hypothetical protein -
XOC_RS21380 (XOC_2053) 2057228..2058013 + 786 WP_014503026.1 helix-turn-helix domain-containing protein -
XOC_RS08945 (XOC_2054) 2058257..2058862 + 606 WP_014503027.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein Antitoxin
XOC_RS08950 (XOC_2055) 2058859..2059710 + 852 WP_014503028.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein Toxin
XOC_RS25055 (XOC_2056) 2059869..2060141 - 273 WP_014503029.1 hypothetical protein -
XOC_RS25500 2060404..2060847 + 444 WP_202812851.1 recombinase family protein -
XOC_RS08960 (XOC_2057) 2060804..2061970 + 1167 WP_202812852.1 recombinase family protein -
XOC_RS08965 (XOC_2058) 2061967..2062308 + 342 WP_014503031.1 ParB N-terminal domain-containing protein -
XOC_RS08975 (XOC_2059) 2063181..2063483 + 303 WP_014503032.1 hypothetical protein -
XOC_RS08980 (XOC_2060) 2063708..2064670 + 963 WP_041183219.1 IS110 family transposase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
flank IS/Tn - - 2063708..2064670 962


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Nucleotidyl transferase AbiEii toxin, Type IV TA system

(34-262)

Antitoxin

Transcriptional regulator, AbiEi antitoxin

(8-55)


Sequences

Toxin        


Download         Length: 284 a.a.        Molecular weight: 31030.87 Da        Isoelectric Point: 7.0657

>T26407 WP_014503028.1 NC_017267:2058859-2059710 [Xanthomonas oryzae pv. oryzicola BLS256]
MSNVAASVRARLRGVAKAQGVDFNQVLVRFALERILYRLSQSEHADRFLLKGALLFTLWYDMPHRATRDADLLGFGASDL
ESVAQTFRDIASVAVDDGIVFDPASVVAEEIRKDAGYAGARILIGGELAKARCRTQIDVGFGDAVTPAPVHSVYPVLLED
LPAPRLRTYPVYTVIAEKLHAIALLGMTNSRMKDYLDLSVLLERESLDIDLLAQAVKATFERRGMAVAAALPIGMTDEFA
HDTSRQALWQAFLKKNELAPEPLAAIVVRLRAALEPALHRAAR

Download         Length: 852 bp

>T26407 NC_017267:2058859-2059710 [Xanthomonas oryzae pv. oryzicola BLS256]
ATGAGCAACGTCGCCGCTTCCGTGCGCGCCCGCCTGCGGGGCGTCGCCAAGGCGCAGGGCGTGGATTTCAATCAGGTGCT
GGTGCGCTTCGCGCTGGAGCGCATCCTTTACCGCCTGAGCCAGTCCGAGCACGCGGATCGTTTCCTGCTCAAGGGCGCGC
TGCTGTTCACGCTCTGGTATGACATGCCGCACCGGGCCACGCGCGACGCCGACCTGCTGGGCTTCGGCGCGAGCGATCTG
GAGTCCGTGGCCCAGACCTTCCGCGACATCGCCAGCGTCGCCGTGGACGACGGCATCGTGTTCGACCCGGCCTCGGTCGT
CGCAGAAGAAATTCGCAAGGACGCCGGATACGCCGGGGCGCGCATCCTCATCGGCGGCGAGCTGGCCAAGGCGCGGTGCA
GGACGCAGATCGACGTTGGCTTCGGCGATGCGGTCACACCGGCTCCGGTGCACTCGGTCTATCCGGTGTTGCTGGAAGAT
CTGCCTGCGCCTCGCCTGCGCACCTATCCCGTCTACACCGTCATCGCGGAAAAGCTCCACGCCATCGCGCTTCTGGGTAT
GACCAACAGTCGGATGAAGGATTACCTCGACCTGTCGGTGCTGCTGGAACGTGAATCCCTGGACATCGATCTGCTGGCGC
AAGCGGTGAAGGCCACTTTCGAGCGACGCGGCATGGCCGTGGCCGCTGCTCTGCCGATCGGCATGACCGACGAGTTCGCG
CACGACACGTCTCGGCAGGCGCTGTGGCAGGCATTCCTCAAGAAGAACGAACTCGCCCCCGAACCCCTGGCTGCCATCGT
GGTTCGACTGCGGGCGGCCTTGGAACCAGCGTTGCACCGGGCTGCTCGATGA

Antitoxin


Download         Length: 202 a.a.        Molecular weight: 22228.93 Da        Isoelectric Point: 10.0752

>AT26407 WP_014503027.1 NC_017267:2058257-2058862 [Xanthomonas oryzae pv. oryzicola BLS256]
MLSDTHTQRVLDLASQKGLLRASNLDAINAPRVVLTRLTAAGVLERVGRGLYRLPDAQGSEFESLAAIATKVPQAVFCLL
TALQFHELTTQLPRQIWIAMPRGSHAPRIGYPPVKMVQMTGDVYAAGIEEHLRDGVKLRVYGAAKTVVDCFKHRNKIGLD
VALEALKDVRAKRKATADDLWRFATVCRVANVMRPYLEAVE

Download         Length: 606 bp

>AT26407 NC_017267:2058257-2058862 [Xanthomonas oryzae pv. oryzicola BLS256]
ATGCTTTCCGACACCCACACCCAGCGCGTCCTCGATCTGGCCAGCCAGAAAGGACTGCTGCGCGCCAGCAATCTGGACGC
CATCAATGCGCCCCGGGTCGTTCTCACGCGCCTGACCGCCGCTGGCGTTCTGGAAAGGGTCGGACGCGGGCTGTACCGCC
TGCCGGACGCGCAGGGATCGGAATTCGAGAGTCTCGCGGCCATCGCCACCAAGGTGCCACAAGCCGTGTTCTGCCTGCTG
ACTGCGCTGCAGTTCCACGAACTGACCACGCAACTGCCGCGCCAGATCTGGATCGCCATGCCGCGCGGCAGTCACGCGCC
CCGGATCGGCTATCCGCCGGTCAAGATGGTTCAGATGACCGGCGACGTCTACGCTGCAGGCATCGAGGAGCACCTGCGCG
ACGGCGTGAAGCTGCGCGTGTACGGTGCGGCCAAGACGGTCGTGGACTGCTTCAAGCACCGCAACAAGATCGGCCTGGAC
GTGGCGCTGGAGGCGCTGAAGGACGTGCGCGCCAAACGCAAGGCCACTGCGGACGACCTGTGGCGCTTTGCTACGGTCTG
CCGCGTGGCCAACGTGATGCGCCCCTATCTGGAGGCGGTCGAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G7TCM5

Antitoxin

Source ID Structure
AlphaFold DB G7TCM4

References