53915

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yafN-yafO (relBE)/YafO-YafN
Location 246466..247160 Replicon chromosome
Accession NZ_CP011322
Organism Escherichia coli strain SQ110

Toxin (Protein)


Gene name yafO Uniprot ID Q47157
Locus tag SG46_RS01150 Protein ID WP_001263489.1
Coordinates 246762..247160 (+) Length 133 a.a.

Antitoxin (Protein)


Gene name yafN Uniprot ID S1QAE3
Locus tag SG46_RS01145 Protein ID WP_000554758.1
Coordinates 246466..246759 (+) Length 98 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SG46_RS01125 242098..242595 + 498 WP_000006255.1 REP-associated tyrosine transposase RayT -
SG46_RS01130 242819..244531 - 1713 Protein_224 flagellar biosynthesis protein FlhA -
SG46_RS01135 244503..245288 + 786 WP_000207552.1 putative lateral flagellar export/assembly protein LafU -
SG46_RS01140 245359..246414 + 1056 WP_001226164.1 DNA polymerase IV -
SG46_RS01145 246466..246759 + 294 WP_000554758.1 type I toxin-antitoxin system antitoxin YafN Antitoxin
SG46_RS01150 246762..247160 + 399 WP_001263489.1 type II toxin-antitoxin system mRNA interferase toxin YafO Toxin
SG46_RS01155 247170..247622 + 453 WP_001059892.1 GNAT family N-acetyltransferase -
SG46_RS01160 247940..248146 + 207 Protein_230 RtcB family protein -
SG46_RS01165 248142..248663 + 522 Protein_231 peptide chain release factor H -
SG46_RS01170 248720..250177 - 1458 WP_001292994.1 cytosol nonspecific dipeptidase -
SG46_RS01175 250438..250896 + 459 WP_001291990.1 xanthine phosphoribosyltransferase -
- 251492..251572 + 81 NuclAT_12 - -
- 251492..251572 + 81 NuclAT_12 - -
- 251492..251572 + 81 NuclAT_12 - -
- 251492..251572 + 81 NuclAT_12 - -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase toxin YafO

(27-130)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 133 a.a.        Molecular weight: 15487.84 Da        Isoelectric Point: 7.4215

>T53915 WP_001263489.1 NZ_CP011322:246762-247160 [Escherichia coli]
MRVFKTKLIRLQLTAEELDALTADFISYKRDGVLPDIFGRDALYDDSFTWPLIKFERVAHIHLANENNPFPPQLRQFSRT
NDEAHLVYCQGAFDEQAWLLIAILKPEPHKLARDNNQMHKIGKMAEAFRMRF

Download         Length: 399 bp

>T53915 NZ_CP011322:246762-247160 [Escherichia coli]
ATGCGGGTATTCAAAACAAAACTTATTCGCCTGCAACTTACAGCAGAGGAACTTGATGCGTTAACGGCGGATTTTATTTC
CTATAAGCGTGACGGTGTTTTGCCAGATATATTTGGTCGCGATGCACTCTACGACGACTCCTTTACCTGGCCATTAATCA
AATTTGAGCGAGTTGCTCATATTCATCTGGCAAATGAGAATAATCCATTTCCGCCACAGTTGCGCCAATTCAGCAGAACG
AATGACGAAGCGCATTTGGTATATTGTCAGGGGGCGTTTGATGAGCAAGCATGGTTGCTCATTGCCATTCTGAAACCTGA
ACCTCATAAACTGGCTCGAGATAACAACCAAATGCATAAAATTGGGAAAATGGCAGAAGCGTTTCGCATGCGTTTTTGA

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 11233.76 Da        Isoelectric Point: 5.2170

>AT53915 WP_000554758.1 NZ_CP011322:246466-246759 [Escherichia coli]
MHRILAEKSVNITELRKNPAKYFIDQPVAVLSNNRPAGYLLSASAFEALMDMLAEQEEKKPIKARFRPSAARLEEITRRA
EQYLNDMTDDDFNDFKE

Download         Length: 294 bp

>AT53915 NZ_CP011322:246466-246759 [Escherichia coli]
ATGCATCGAATTCTCGCTGAAAAATCGGTCAATATCACTGAGTTACGTAAAAACCCAGCTAAATACTTTATTGATCAACC
GGTTGCGGTTCTTTCTAATAATCGCCCCGCAGGATATCTCTTAAGTGCCAGCGCATTCGAAGCGTTAATGGACATGCTTG
CTGAACAAGAGGAGAAAAAGCCCATAAAGGCGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCT
GAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A090J8B1

Antitoxin

Source ID Structure
AlphaFold DB S1QAE3

References