Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | hicAB/HicB-HicA |
Location | 1332779..1333227 | Replicon | chromosome |
Accession | NZ_CP011108 | ||
Organism | Thermotoga maritima strain Tma100 |
Toxin (Protein)
Gene name | hicA | Uniprot ID | Q9X138 |
Locus tag | THMB_RS06675 | Protein ID | WP_004079902.1 |
Coordinates | 1332779..1333012 (-) | Length | 78 a.a. |
Antitoxin (Protein)
Gene name | hicA | Uniprot ID | G4FE38 |
Locus tag | THMB_RS06680 | Protein ID | WP_004079900.1 |
Coordinates | 1333009..1333227 (-) | Length | 73 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
THMB_RS06640 | 1328297..1329103 | + | 807 | WP_004079915.1 | ABC transporter permease | - |
THMB_RS06650 | 1329321..1329755 | + | 435 | WP_004079914.1 | ABC transporter permease | - |
THMB_RS09865 | 1329759..1330529 | + | 771 | Protein_1284 | ABC transporter permease | - |
THMB_RS06665 | 1330592..1332334 | + | 1743 | WP_004079909.1 | ABC transporter ATP-binding protein/permease | - |
THMB_RS09780 | 1332405..1332554 | - | 150 | WP_081434644.1 | type II toxin-antitoxin system HicA family toxin | - |
THMB_RS06670 | 1332544..1332756 | - | 213 | WP_004079908.1 | hypothetical protein | - |
THMB_RS06675 | 1332779..1333012 | - | 234 | WP_004079902.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
THMB_RS06680 | 1333009..1333227 | - | 219 | WP_004079900.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
THMB_RS06685 | 1333324..1334931 | - | 1608 | WP_010865307.1 | helix-turn-helix domain-containing protein | - |
THMB_RS06690 | 1335127..1335291 | + | 165 | WP_004083364.1 | hypothetical protein | - |
THMB_RS06695 | 1335368..1335463 | + | 96 | WP_010865309.1 | Cys-rich RiPP peptide | - |
THMB_RS06700 | 1335565..1336956 | + | 1392 | WP_004083362.1 | radical SAM protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
inside | Genomic island | - | - | 1325065..1336956 | 11891 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 78 a.a. Molecular weight: 8983.60 Da Isoelectric Point: 10.4691
>T53381 WP_004079902.1 NZ_CP011108:c1333012-1332779 [Thermotoga maritima]
MSYLPIVDPKTMEKVLLKLGFQRVRQKGSHVFYRHSNGKYTTIPFHAKETCPSHLIRKIIREAGISVEEFKKVLENL
MSYLPIVDPKTMEKVLLKLGFQRVRQKGSHVFYRHSNGKYTTIPFHAKETCPSHLIRKIIREAGISVEEFKKVLENL
Download Length: 234 bp
>T53381 NZ_CP011108:c1333012-1332779 [Thermotoga maritima]
TTGAGTTATCTTCCAATAGTTGATCCAAAAACTATGGAAAAGGTTTTACTGAAACTTGGATTTCAACGTGTTCGCCAAAA
AGGAAGTCATGTGTTCTACAGGCACAGCAATGGAAAGTATACGACCATCCCATTTCATGCAAAAGAGACTTGCCCAAGTC
ACTTAATAAGAAAAATCATCCGTGAAGCGGGTATATCAGTGGAGGAATTCAAGAAAGTACTTGAGAATCTGTGA
TTGAGTTATCTTCCAATAGTTGATCCAAAAACTATGGAAAAGGTTTTACTGAAACTTGGATTTCAACGTGTTCGCCAAAA
AGGAAGTCATGTGTTCTACAGGCACAGCAATGGAAAGTATACGACCATCCCATTTCATGCAAAAGAGACTTGCCCAAGTC
ACTTAATAAGAAAAATCATCCGTGAAGCGGGTATATCAGTGGAGGAATTCAAGAAAGTACTTGAGAATCTGTGA
Antitoxin
Download Length: 73 a.a. Molecular weight: 8186.38 Da Isoelectric Point: 4.0891
>AT53381 WP_004079900.1 NZ_CP011108:c1333227-1333009 [Thermotoga maritima]
VRKIFTAIIEYDPEKKQYVGMVPDVPGVHTVGSSLEEVRRNLKEVLELVLEEAGDEINLQEFVALEMIEVET
VRKIFTAIIEYDPEKKQYVGMVPDVPGVHTVGSSLEEVRRNLKEVLELVLEEAGDEINLQEFVALEMIEVET
Download Length: 219 bp
>AT53381 NZ_CP011108:c1333227-1333009 [Thermotoga maritima]
GTGCGTAAAATTTTCACAGCTATCATTGAATACGATCCTGAAAAAAAGCAATATGTTGGAATGGTTCCAGATGTTCCAGG
TGTACATACTGTAGGTAGTTCCTTAGAAGAAGTGAGAAGGAATTTAAAAGAGGTGCTTGAACTCGTATTGGAGGAAGCAG
GAGATGAAATAAATCTCCAGGAATTCGTGGCTCTTGAGATGATAGAGGTGGAAACTTGA
GTGCGTAAAATTTTCACAGCTATCATTGAATACGATCCTGAAAAAAAGCAATATGTTGGAATGGTTCCAGATGTTCCAGG
TGTACATACTGTAGGTAGTTCCTTAGAAGAAGTGAGAAGGAATTTAAAAGAGGTGCTTGAACTCGTATTGGAGGAAGCAG
GAGATGAAATAAATCTCCAGGAATTCGTGGCTCTTGAGATGATAGAGGTGGAAACTTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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