53192

Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 3954406..3955205 Replicon chromosome
Accession NZ_CP011018
Organism Escherichia coli strain CI5

Toxin (Protein)


Gene name yhaV Uniprot ID -
Locus tag VK74_RS19650 Protein ID WP_000347253.1
Coordinates 3954406..3954870 (-) Length 155 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID -
Locus tag VK74_RS19655 Protein ID WP_024251361.1
Coordinates 3954870..3955205 (-) Length 112 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
VK74_RS19620 3949407..3949841 - 435 WP_000948824.1 PTS sugar transporter subunit IIA -
VK74_RS19625 3949859..3950737 - 879 WP_001295548.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
VK74_RS19630 3950727..3951506 - 780 WP_000406214.1 PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC -
VK74_RS19635 3951517..3951990 - 474 WP_001295547.1 PTS N-acetylgalactosamine transporter subunit IIB -
VK74_RS19640 3952013..3953293 - 1281 WP_000681910.1 tagatose-bisphosphate aldolase subunit KbaZ -
VK74_RS19645 3953542..3954351 + 810 WP_000072187.1 aga operon transcriptional regulator AgaR -
VK74_RS19650 3954406..3954870 - 465 WP_000347253.1 type II toxin-antitoxin system ribonuclease toxin YhaV Toxin
VK74_RS19655 3954870..3955205 - 336 WP_024251361.1 type II toxin-antitoxin system antitoxin PrlF Antitoxin
VK74_RS19660 3955354..3956925 - 1572 WP_001273766.1 galactarate dehydratase -
VK74_RS19665 3957300..3958634 + 1335 WP_000599636.1 galactarate/glucarate/glycerate transporter GarP -
VK74_RS19670 3958650..3959420 + 771 WP_001058226.1 2-dehydro-3-deoxyglucarate aldolase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(12-150)

Antitoxin

(14-110)


Sequences


Toxin        


Download         Length: 155 a.a.        Molecular weight: 17764.14 Da        Isoelectric Point: 9.4947

>T53192 WP_000347253.1 NZ_CP011018:c3954870-3954406 [Escherichia coli]
MDFPQRVNGWALYAHPCFQETYDALVAEVEALKGKDPENYQRKAATKLLAVVHKVIEEHITVNPSSPAFRHGKSLGSGKN
KDWSRVKFGAGRYRLFFRYSEKEKVIILGWMNDENTLRTYGKKTDAYTVFSKMLKRGHPPADWESLTQETEETH

Download         Length: 465 bp

>T53192 NZ_CP011018:c3954870-3954406 [Escherichia coli]
ATGGATTTTCCACAAAGGGTTAATGGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTACGATGCTTTAGTTGC
CGAAGTCGAGGCATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCGCCACAAAGTTATTGGCGGTGGTCCATA
AAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAAT
AAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGCTATCGTCTCTTCTTTCGTTACAGTGAAAAAGAGAAAGTCATCAT
TCTGGGATGGATGAACGATGAAAACACGCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGTAAAATGT
TAAAAAGAGGACATCCTCCTGCCGACTGGGAAAGCCTCACCCAAGAAACAGAAGAAACCCATTGA

Antitoxin


Download         Length: 112 a.a.        Molecular weight: 12348.90 Da        Isoelectric Point: 4.8616

>AT53192 WP_024251361.1 NZ_CP011018:c3955205-3954870 [Escherichia coli]
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNN
SQKTRPFNIQQGKKLVAGMDVNIDDEIGDDE

Download         Length: 336 bp

>AT53192 NZ_CP011018:c3955205-3954870 [Escherichia coli]
ATGCCCGCTAATGCTCGCTCTCACGCAGTACTGACCACTGAATCAAAGGTCACGATACGCGGACAAACAACTATCCCCGC
TCCAGTGCGTGAGGCCTTAAAACTGAAGCCAGGCCAGGACAGCATTCATTACGAAATTCTGCCTGGTGGGCAAGTATTTA
TGTGCCGACTGGGAGATGAACAGGAGGATCATACGATGAATGCATTTTTGCGTTTTCTGGATGCAGATATCCAGAACAAC
TCGCAAAAAACTCGTCCATTCAACATTCAACAAGGAAAGAAACTTGTCGCTGGCATGGACGTCAACATTGATGATGAGAT
TGGCGACGACGAATAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure

References