Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | mqsRA (relBE)/MqsR-MqsA |
Location | 358344..359044 | Replicon | chromosome |
Accession | NZ_CP010979 | ||
Organism | Pseudomonas putida S13.1.2 |
Toxin (Protein)
Gene name | mqsR | Uniprot ID | A0A0C5RRJ0 |
Locus tag | N805_RS01405 | Protein ID | WP_026034591.1 |
Coordinates | 358344..358640 (+) | Length | 99 a.a. |
Antitoxin (Protein)
Gene name | mqsA | Uniprot ID | A0A0C5S3M0 |
Locus tag | N805_RS01410 | Protein ID | WP_026034592.1 |
Coordinates | 358643..359044 (+) | Length | 134 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
N805_RS01380 | 353638..354831 | - | 1194 | WP_026034590.1 | efflux RND transporter periplasmic adaptor subunit | - |
N805_RS01385 | 355057..355506 | - | 450 | WP_019472600.1 | azurin | - |
N805_RS01390 | 355727..356203 | + | 477 | WP_019472601.1 | sigma-70 family RNA polymerase sigma factor | - |
N805_RS01395 | 356372..356851 | + | 480 | WP_019472602.1 | hypothetical protein | - |
N805_RS01400 | 356924..358249 | + | 1326 | WP_019472603.1 | MFS transporter | - |
N805_RS01405 | 358344..358640 | + | 297 | WP_026034591.1 | type II toxin-antitoxin system MqsR family toxin | Toxin |
N805_RS01410 | 358643..359044 | + | 402 | WP_026034592.1 | type II toxin-antitoxin system MqsA family antitoxin | Antitoxin |
N805_RS01415 | 359116..360798 | - | 1683 | WP_080956764.1 | electron transfer flavoprotein-ubiquinone oxidoreductase | - |
N805_RS01420 | 361331..362080 | + | 750 | WP_028613363.1 | electron transfer flavoprotein subunit beta/FixA family protein | - |
N805_RS01425 | 362081..363010 | + | 930 | WP_028613362.1 | FAD-binding protein | - |
N805_RS01430 | 363086..363907 | + | 822 | WP_019472048.1 | transporter substrate-binding domain-containing protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 11052.96 Da Isoelectric Point: 9.7758
>T53136 WP_026034591.1 NZ_CP010979:358344-358640 [Pseudomonas putida S13.1.2]
MEKRTPHCPLERVKVLAAARRISPTGAALRGARALGMDYPGMLEVISSLERTDFYKSMTSHMDHRVWQDVYRPLTAIGYV
YLKVSVVDDVLIVSFKGL
MEKRTPHCPLERVKVLAAARRISPTGAALRGARALGMDYPGMLEVISSLERTDFYKSMTSHMDHRVWQDVYRPLTAIGYV
YLKVSVVDDVLIVSFKGL
Download Length: 297 bp
>T53136 NZ_CP010979:358344-358640 [Pseudomonas putida S13.1.2]
ATGGAAAAGAGAACGCCTCACTGTCCGCTGGAACGGGTAAAAGTCTTGGCTGCTGCAAGGCGCATCAGCCCTACAGGCGC
TGCACTGAGAGGCGCCAGAGCGCTGGGAATGGATTATCCGGGCATGCTTGAAGTGATCTCCAGTTTGGAGCGCACTGATT
TTTACAAGAGCATGACCAGTCATATGGATCACCGGGTTTGGCAGGACGTCTATCGTCCGCTTACAGCAATTGGGTACGTT
TATCTGAAAGTGTCCGTGGTAGACGACGTGCTCATCGTGTCTTTCAAGGGGTTGTAA
ATGGAAAAGAGAACGCCTCACTGTCCGCTGGAACGGGTAAAAGTCTTGGCTGCTGCAAGGCGCATCAGCCCTACAGGCGC
TGCACTGAGAGGCGCCAGAGCGCTGGGAATGGATTATCCGGGCATGCTTGAAGTGATCTCCAGTTTGGAGCGCACTGATT
TTTACAAGAGCATGACCAGTCATATGGATCACCGGGTTTGGCAGGACGTCTATCGTCCGCTTACAGCAATTGGGTACGTT
TATCTGAAAGTGTCCGTGGTAGACGACGTGCTCATCGTGTCTTTCAAGGGGTTGTAA
Antitoxin
Download Length: 134 a.a. Molecular weight: 14548.56 Da Isoelectric Point: 4.7551
>AT53136 WP_026034592.1 NZ_CP010979:358643-359044 [Pseudomonas putida S13.1.2]
MRCPICGGAELAPDVQGMPYSYKGEATVIPDVSGDYCSGCGECVLSHDEAMRVSNLMTAFERQVNATVVDPSFIASMRRK
FDLDQREAGEIFGGGVNAFSRYENGKTTPPVALVKLLKLLDRHPELFEEVRTA
MRCPICGGAELAPDVQGMPYSYKGEATVIPDVSGDYCSGCGECVLSHDEAMRVSNLMTAFERQVNATVVDPSFIASMRRK
FDLDQREAGEIFGGGVNAFSRYENGKTTPPVALVKLLKLLDRHPELFEEVRTA
Download Length: 402 bp
>AT53136 NZ_CP010979:358643-359044 [Pseudomonas putida S13.1.2]
ATGAGATGTCCAATATGCGGCGGAGCGGAGCTTGCACCTGATGTTCAGGGCATGCCCTATAGCTATAAAGGCGAGGCGAC
CGTCATCCCTGACGTAAGTGGCGATTACTGTTCCGGATGTGGTGAATGTGTACTTAGCCACGATGAAGCCATGCGTGTCA
GTAACCTCATGACGGCATTCGAGCGCCAAGTCAACGCAACGGTTGTGGATCCTTCCTTCATTGCTTCAATGCGCCGGAAG
TTCGACCTCGACCAGCGTGAAGCGGGGGAAATCTTCGGTGGTGGGGTCAACGCGTTCTCCCGATATGAAAACGGCAAGAC
CACACCACCCGTGGCGTTGGTGAAACTGCTCAAGCTGCTGGATCGCCATCCAGAGCTCTTCGAGGAAGTGCGTACTGCCT
GA
ATGAGATGTCCAATATGCGGCGGAGCGGAGCTTGCACCTGATGTTCAGGGCATGCCCTATAGCTATAAAGGCGAGGCGAC
CGTCATCCCTGACGTAAGTGGCGATTACTGTTCCGGATGTGGTGAATGTGTACTTAGCCACGATGAAGCCATGCGTGTCA
GTAACCTCATGACGGCATTCGAGCGCCAAGTCAACGCAACGGTTGTGGATCCTTCCTTCATTGCTTCAATGCGCCGGAAG
TTCGACCTCGACCAGCGTGAAGCGGGGGAAATCTTCGGTGGTGGGGTCAACGCGTTCTCCCGATATGAAAACGGCAAGAC
CACACCACCCGTGGCGTTGGTGAAACTGCTCAAGCTGCTGGATCGCCATCCAGAGCTCTTCGAGGAAGTGCGTACTGCCT
GA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0C5RRJ0 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0C5S3M0 |