Detailed information of TA system TA052965

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): mqsRA (relBE)/MqsR-MqsA
• Location: 1529181..1529836
• Replicon: chromosome
• Accession: NZ_CP010841
• Organism: Bordetella pertussis strain H380

Toxin (Protein)

• Gene name: mqsR
• Uniprot ID: -
• Locus tag: RD07_RS07340
• Protein ID: WP_047122780.1
• Coordinates: 1529181..1529432 (+)
• Length: 84 a.a.

Antitoxin (Protein)

• Gene name: mqsA
• Uniprot ID: Q7VY40
• Locus tag: RD07_RS07345
• Protein ID: WP_003809516.1
• Coordinates: 1529435..1529836 (+)
• Length: 134 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
RD07_RS07315	1524342..1525472	-	1131	WP_010930401.1	helix-turn-helix transcriptional regulator	-
RD07_RS07320	1525707..1526288	+	582	WP_019247931.1	molybdenum cofactor biosysynthesis protein	-
RD07_RS07325	1526425..1527489	+	1065	WP_003809510.1	fructose-bisphosphate aldolase class II	-
RD07_RS07330	1527574..1528020	-	447	WP_003819827.1	GFA family protein	-
RD07_RS07335	1528245..1529126	+	882	WP_003809513.1	phosphoribosylaminoimidazolesuccinocarboxamide synthase	-
RD07_RS07340	1529181..1529432	+	252	WP_047122780.1	type II toxin-antitoxin system MqsR family toxin	Toxin
RD07_RS07345	1529435..1529836	+	402	WP_003809516.1	type II toxin-antitoxin system MqsA family antitoxin	Antitoxin
RD07_RS19840	1529856..1530092	+	237	WP_010930404.1	membrane protein	-
RD07_RS07350	1530100..1530579	+	480	WP_010930405.1	disulfide bond formation protein B	-
RD07_RS07355	1530729..1531244	+	516	WP_019247930.1	5-(carboxyamino)imidazole ribonucleotide mutase	-
RD07_RS07360	1531247..1532437	+	1191	WP_010930406.1	5-(carboxyamino)imidazole ribonucleotide synthase	-
RD07_RS07365	1532457..1533494	+	1038	WP_023853543.1	threonylcarbamoyl-AMP synthase	-
RD07_RS07370	1533631..1534653	+	1023	WP_003809532.1	amino acid ABC transporter substrate-binding protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• mRNA interferase toxin MqsR (10-82)

Antitoxin

• Antitoxin MqsA/HigA-2 (1-131)

Sequences

Toxin

Protein

• Length: 84 a.a.
• Molecular weight: 8952.52 Da
• Isoelectric Point: 9.7242

>T52965 WP_047122780.1 NZ_CP010841:1529181-1529432 [Bordetella pertussis]
IGGAATKKPGQKRRAGAAALGLDFSAMVEIVLALTPRDFHKSMTTHADHRIWQDVYCPVTAMGAVYLKLTVLDGVPIVSF
KEL

Nucleotide

• Length: 252 bp

>T52965 NZ_CP010841:1529181-1529432 [Bordetella pertussis]
ATTGGAGGCGCGGCGACAAAAAAGCCGGGACAAAAGCGTCGCGCCGGGGCGGCGGCGCTGGGGCTGGATTTCAGCGCCAT
GGTCGAAATCGTGCTTGCATTGACACCGCGGGATTTCCACAAAAGCATGACTACCCATGCCGACCATCGCATTTGGCAGG
ACGTCTATTGCCCGGTGACAGCGATGGGCGCCGTCTACCTGAAGCTGACGGTCCTCGACGGCGTGCCGATCGTGTCGTTC
AAGGAGTTGTGA

Antitoxin

Protein

• Length: 134 a.a.
• Molecular weight: 14528.70 Da
• Isoelectric Point: 8.5005

>AT52965 WP_003809516.1 NZ_CP010841:1529435-1529836 [Bordetella pertussis]
MKCPVCGAAALARDTRDVPYSYKGETITIAAVTGDWCPACGENVLDGAESARVSEAMLAFNRLVNARRVDPGFIVRVRRK
LGLDQREAAALFGGGTNAFSRYENGKTRPPLALVKLLRLLDRHPELLEEVRAD

Nucleotide

• Length: 402 bp

>AT52965 NZ_CP010841:1529435-1529836 [Bordetella pertussis]
ATGAAGTGTCCCGTATGCGGAGCGGCCGCGCTGGCGCGTGATACTCGCGATGTGCCCTATAGCTACAAGGGCGAGACCAT
CACGATTGCGGCGGTGACGGGCGACTGGTGTCCGGCATGCGGCGAGAACGTGCTCGATGGCGCTGAATCGGCGCGGGTGA
GCGAGGCCATGCTGGCTTTCAACCGCCTGGTCAACGCCCGCCGCGTCGACCCCGGGTTCATCGTGCGGGTGCGCAGGAAG
CTGGGGCTGGACCAGCGCGAAGCCGCGGCGCTGTTCGGCGGCGGCACCAATGCGTTCTCGCGTTACGAGAACGGCAAGAC
GCGCCCGCCGCTGGCGCTGGTGAAGCTGCTCAGGCTGCTGGATCGCCATCCGGAGCTGCTGGAGGAAGTCCGTGCGGATT
GA

Structures

Antitoxin

• AlphaFold DB: A0A0H3LKS6