Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) yafN-yafO (relBE)/YafO-YafN
Location 1066001..1066695 Replicon chromosome
Accession NZ_CP010445
Organism Escherichia coli K-12 strain K-12 MG1655

Toxin (Protein)


Gene name yafO Uniprot ID Q47157
Locus tag SF31_RS05240 Protein ID WP_001263489.1
Coordinates 1066297..1066695 (+) Length 133 a.a.

Antitoxin (Protein)


Gene name yafN Uniprot ID S1QAE3
Locus tag SF31_RS05235 Protein ID WP_000554758.1
Coordinates 1066001..1066294 (+) Length 98 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SF31_RS05215 1061633..1062130 + 498 WP_000006255.1 REP-associated tyrosine transposase RayT -
SF31_RS05220 1062354..1064066 - 1713 Protein_962 flagellar biosynthesis protein FlhA -
SF31_RS05225 1064038..1064823 + 786 WP_000207552.1 putative lateral flagellar export/assembly protein LafU -
SF31_RS05230 1064894..1065949 + 1056 WP_001226164.1 DNA polymerase IV -
SF31_RS05235 1066001..1066294 + 294 WP_000554758.1 type I toxin-antitoxin system antitoxin YafN Antitoxin
SF31_RS05240 1066297..1066695 + 399 WP_001263489.1 type II toxin-antitoxin system mRNA interferase toxin YafO Toxin
SF31_RS05245 1066705..1067157 + 453 WP_001059892.1 GNAT family N-acetyltransferase -
SF31_RS05250 1067475..1067681 + 207 Protein_968 RtcB family protein -
SF31_RS05255 1067677..1068198 + 522 Protein_969 peptide chain release factor H -
SF31_RS05260 1068255..1069712 - 1458 WP_001292994.1 cytosol nonspecific dipeptidase -
SF31_RS05265 1069973..1070431 + 459 WP_001291990.1 xanthine phosphoribosyltransferase -
- 1071027..1071107 + 81 NuclAT_12 - -
- 1071027..1071107 + 81 NuclAT_12 - -
- 1071027..1071107 + 81 NuclAT_12 - -
- 1071027..1071107 + 81 NuclAT_12 - -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(27-130)

Antitoxin


No domain identified.



Sequences


Toxin        


Download         Length: 133 a.a.        Molecular weight: 15487.84 Da        Isoelectric Point: 7.4215

>T52701 WP_001263489.1 NZ_CP010445:1066297-1066695 [Escherichia coli K-12]
MRVFKTKLIRLQLTAEELDALTADFISYKRDGVLPDIFGRDALYDDSFTWPLIKFERVAHIHLANENNPFPPQLRQFSRT
NDEAHLVYCQGAFDEQAWLLIAILKPEPHKLARDNNQMHKIGKMAEAFRMRF

Download         Length: 399 bp

>T52701 NZ_CP010445:1066297-1066695 [Escherichia coli K-12]
ATGCGGGTATTCAAAACAAAACTTATTCGCCTGCAACTTACAGCAGAGGAACTTGATGCGTTAACGGCGGATTTTATTTC
CTATAAGCGTGACGGTGTTTTGCCAGATATATTTGGTCGCGATGCACTCTACGACGACTCCTTTACCTGGCCATTAATCA
AATTTGAGCGAGTTGCTCATATTCATCTGGCAAATGAGAATAATCCATTTCCGCCACAGTTGCGCCAATTCAGCAGAACG
AATGACGAAGCGCATTTGGTATATTGTCAGGGGGCGTTTGATGAGCAAGCATGGTTGCTCATTGCCATTCTGAAACCTGA
ACCTCATAAACTGGCTCGAGATAACAACCAAATGCATAAAATTGGGAAAATGGCAGAAGCGTTTCGCATGCGTTTTTGA

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 11233.76 Da        Isoelectric Point: 5.2170

>AT52701 WP_000554758.1 NZ_CP010445:1066001-1066294 [Escherichia coli K-12]
MHRILAEKSVNITELRKNPAKYFIDQPVAVLSNNRPAGYLLSASAFEALMDMLAEQEEKKPIKARFRPSAARLEEITRRA
EQYLNDMTDDDFNDFKE

Download         Length: 294 bp

>AT52701 NZ_CP010445:1066001-1066294 [Escherichia coli K-12]
ATGCATCGAATTCTCGCTGAAAAATCGGTCAATATCACTGAGTTACGTAAAAACCCAGCTAAATACTTTATTGATCAACC
GGTTGCGGTTCTTTCTAATAATCGCCCCGCAGGATATCTCTTAAGTGCCAGCGCATTCGAAGCGTTAATGGACATGCTTG
CTGAACAAGAGGAGAAAAAGCCCATAAAGGCGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCT
GAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB A0A090J8B1


Antitoxin

Source ID Structure
AlphaFold DB S1QAE3

References