Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
Location | 2530076..2530593 | Replicon | chromosome |
Accession | NZ_CP010297 | ||
Organism | Staphylococcus aureus strain ATCC BAA1680 |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | T1YC79 |
Locus tag | QT38_RS11985 | Protein ID | WP_000113262.1 |
Coordinates | 2530076..2530342 (-) | Length | 89 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | A0A5A8VWS3 |
Locus tag | QT38_RS11990 | Protein ID | WP_000584502.1 |
Coordinates | 2530342..2530593 (-) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
QT38_RS11960 | 2525502..2526038 | - | 537 | WP_000169317.1 | GNAT family N-acetyltransferase | - |
QT38_RS11965 | 2526271..2527095 | - | 825 | WP_000572040.1 | formate/nitrite transporter family protein | - |
QT38_RS11970 | 2527312..2527494 | - | 183 | WP_000230294.1 | hypothetical protein | - |
QT38_RS11975 | 2527578..2528045 | - | 468 | WP_000153344.1 | SRPBCC domain-containing protein | - |
QT38_RS11980 | 2528231..2529781 | - | 1551 | WP_000727762.1 | zinc ABC transporter substrate-binding lipoprotein AdcA | - |
QT38_RS15435 | 2529970..2530041 | - | 72 | Protein_2467 | hypothetical protein | - |
QT38_RS11985 | 2530076..2530342 | - | 267 | WP_000113262.1 | Txe/YoeB family addiction module toxin | Toxin |
QT38_RS11990 | 2530342..2530593 | - | 252 | WP_000584502.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
QT38_RS15010 | 2530758..2530859 | - | 102 | WP_001791744.1 | hypothetical protein | - |
QT38_RS11995 | 2530866..2531465 | - | 600 | WP_000162813.1 | DsbA family protein | - |
QT38_RS12000 | 2531484..2531843 | - | 360 | WP_000819847.1 | DUF4467 domain-containing protein | - |
QT38_RS12005 | 2532098..2533348 | + | 1251 | WP_001012222.1 | FemA/FemB family glycyltransferase FmhA | - |
QT38_RS12010 | 2533445..2534176 | - | 732 | WP_000615461.1 | amino acid ABC transporter ATP-binding protein | - |
QT38_RS12015 | 2534173..2534892 | - | 720 | WP_000479576.1 | amino acid ABC transporter permease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10437.95 Da Isoelectric Point: 9.9143
>T51880 WP_000113262.1 NZ_CP010297:c2530342-2530076 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
Download Length: 267 bp
>T51880 NZ_CP010297:c2530342-2530076 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9417.65 Da Isoelectric Point: 4.4702
>AT51880 WP_000584502.1 NZ_CP010297:c2530593-2530342 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSVMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
MIIKNYSYARQNLKALMTKVNDDSVMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
Download Length: 252 bp
>AT51880 NZ_CP010297:c2530593-2530342 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGTTATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGTTATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
PDB | 6L8G | |
PDB | 6L8F | |
PDB | 7CUA | |
PDB | 6L8E |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A5A8VWS3 |