Detailed information of TA system TA051316

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): higBA (relBE)/HTH(antitoxin)
• Location: 4863972..4864574
• Replicon: chromosome
• Accession: NZ_CP010196
• Organism: Escherichia coli strain M9

Toxin (Protein)

• Gene name: higB
• Uniprot ID: U9XIS6
• Locus tag: RG58_RS25355
• Protein ID: WP_000897305.1
• Coordinates: 4864263..4864574 (-)
• Length: 104 a.a.

Antitoxin (Protein)

• Gene name: higA
• Uniprot ID: -
• Locus tag: RG58_RS25350
• Protein ID: WP_000356397.1
• Coordinates: 4863972..4864262 (-)
• Length: 97 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
RG58_RS25315	4859519..4860154	+	636	WP_000829013.1	formate dehydrogenase cytochrome b556 subunit	-
RG58_RS25320	4860151..4861080	+	930	WP_000027708.1	formate dehydrogenase accessory protein FdhE	-
RG58_RS25325	4861479..4862459	+	981	WP_000399648.1	IS110-like element IS621 family transposase	-
RG58_RS25335	4862688..4862930	-	243	WP_001086388.1	hypothetical protein	-
RG58_RS25340	4863149..4863367	-	219	WP_001295676.1	ribbon-helix-helix domain-containing protein	-
RG58_RS25350	4863972..4864262	-	291	WP_000356397.1	helix-turn-helix domain-containing protein	Antitoxin
RG58_RS25355	4864263..4864574	-	312	WP_000897305.1	hypothetical protein	Toxin
RG58_RS25360	4864803..4865711	+	909	WP_001162704.1	alpha/beta hydrolase	-
RG58_RS25365	4865775..4866716	-	942	WP_001343389.1	fatty acid biosynthesis protein FabY	-
RG58_RS25370	4866761..4867198	-	438	WP_000560983.1	D-tyrosyl-tRNA(Tyr) deacylase	-
RG58_RS25375	4867195..4868067	-	873	WP_000920762.1	virulence factor BrkB family protein	-
RG58_RS25380	4868061..4868660	-	600	WP_001295269.1	glucose-1-phosphatase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	flank	IS/Tn	-	-	4861479..4862459	980

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

• Cro/C1-type helix-turn-helix domain (36-85)

Sequences

Toxin

Protein

• Length: 104 a.a.
• Molecular weight: 12190.19 Da
• Isoelectric Point: 9.7791

>T51316 WP_000897305.1 NZ_CP010196:c4864574-4864263 [Escherichia coli]
MLFIETEIFTEDVQKLLTDDEFSRFQFFLALNPDYGEVIPETGGLRKVRWVSGGKGKRAGVRVIYFHQVKHYEIRLLLIY
RKGIKDDLSPQEKAMLRLLNTRW

Nucleotide

• Length: 312 bp

>T51316 NZ_CP010196:c4864574-4864263 [Escherichia coli]
ATGCTCTTCATCGAAACGGAAATTTTTACTGAAGATGTTCAAAAACTGCTGACCGACGATGAATTCAGTCGTTTTCAGTT
TTTCCTGGCCTTGAATCCTGACTATGGTGAGGTAATACCTGAAACTGGTGGGTTAAGAAAGGTTCGATGGGTTTCAGGAG
GAAAGGGGAAACGTGCTGGTGTCAGGGTTATTTACTTTCATCAGGTTAAACATTATGAGATCAGATTACTGCTTATTTAT
CGTAAGGGTATTAAAGATGATCTGTCTCCCCAGGAAAAAGCAATGCTCCGGTTGTTAAATACGAGGTGGTAA

Antitoxin

Protein

• Length: 97 a.a.
• Molecular weight: 10846.43 Da
• Isoelectric Point: 10.8907

>AT51316 WP_000356397.1 NZ_CP010196:c4864262-4863972 [Escherichia coli]
MDKALFERLTHSMAQMNEIIEGTRQPSRTFEVDAMKIKEIRRASGLSQSKFADLISVSVDTLRNWEQGRRSPTGPAKALL
RAIANDPQHVLQALNR

Nucleotide

• Length: 291 bp

>AT51316 NZ_CP010196:c4864262-4863972 [Escherichia coli]
ATGGATAAGGCACTTTTTGAGCGGTTGACTCACAGCATGGCCCAGATGAATGAAATTATTGAAGGAACGCGACAGCCTTC
GCGGACTTTTGAAGTTGATGCTATGAAAATCAAAGAAATACGCCGCGCTTCAGGGTTGTCACAATCTAAATTTGCCGATC
TTATTTCTGTAAGCGTAGACACGTTGCGTAACTGGGAGCAGGGGCGACGTTCACCGACCGGGCCTGCAAAGGCTTTGCTG
CGAGCGATTGCCAATGATCCGCAACATGTGCTGCAAGCACTTAACCGTTAG

Structures

Toxin

• AlphaFold DB: A0A0E0Y7I7