Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/RelE-MqsA |
| Location | 1500908..1501541 | Replicon | chromosome |
| Accession | NZ_CP009984 | ||
| Organism | Vibrio vulnificus strain FORC_009 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | A0A347UQS4 |
| Locus tag | FORC9_RS06960 | Protein ID | WP_012600340.1 |
| Coordinates | 1500908..1501240 (+) | Length | 111 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | FORC9_RS06965 | Protein ID | WP_060531655.1 |
| Coordinates | 1501227..1501541 (+) | Length | 105 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC9_RS06935 | 1496336..1496878 | - | 543 | WP_060531651.1 | porin family protein | - |
| FORC9_RS06940 | 1497153..1497356 | + | 204 | Protein_1465 | hypothetical protein | - |
| FORC9_RS06945 | 1497640..1498608 | - | 969 | WP_081036190.1 | IS30 family transposase | - |
| FORC9_RS23485 | 1498639..1498863 | + | 225 | WP_081036232.1 | DUF3265 domain-containing protein | - |
| FORC9_RS06950 | 1498848..1499675 | + | 828 | WP_060531653.1 | restriction endonuclease | - |
| FORC9_RS23490 | 1500087..1500239 | + | 153 | WP_196374722.1 | DUF3265 domain-containing protein | - |
| FORC9_RS06955 | 1500417..1500677 | + | 261 | WP_060532964.1 | DUF4282 domain-containing protein | - |
| FORC9_RS23495 | 1500664..1500870 | + | 207 | WP_081036316.1 | DUF3265 domain-containing protein | - |
| FORC9_RS06960 | 1500908..1501240 | + | 333 | WP_012600340.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| FORC9_RS06965 | 1501227..1501541 | + | 315 | WP_060531655.1 | DNA-binding transcriptional regulator | Antitoxin |
| FORC9_RS23500 | 1501556..1501648 | + | 93 | WP_072612521.1 | DUF3265 domain-containing protein | - |
| FORC9_RS24175 | 1501685..1502437 | + | 753 | WP_060531657.1 | hypothetical protein | - |
| FORC9_RS23510 | 1502439..1502561 | + | 123 | WP_081036317.1 | DUF3265 domain-containing protein | - |
| FORC9_RS06975 | 1502577..1502921 | + | 345 | WP_060531659.1 | hypothetical protein | - |
| FORC9_RS24180 | 1502960..1503037 | + | 78 | WP_108654700.1 | DUF3265 domain-containing protein | - |
| FORC9_RS06980 | 1503077..1503790 | + | 714 | WP_060531660.1 | hypothetical protein | - |
| FORC9_RS06985 | 1504021..1504386 | + | 366 | WP_060531662.1 | hypothetical protein | - |
| FORC9_RS23520 | 1504383..1504511 | + | 129 | WP_155521496.1 | DUF3265 domain-containing protein | - |
| FORC9_RS23525 | 1504853..1504981 | + | 129 | WP_081036318.1 | DUF3265 domain-containing protein | - |
| FORC9_RS06990 | 1505354..1506322 | - | 969 | WP_081036190.1 | IS30 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 1346398..1521281 | 174883 | |
| - | flank | IS/Tn | - | - | 1497640..1498608 | 968 | |
| - | inside | IScluster/Tn | - | - | 1505354..1515884 | 10530 | |
| - | inside | Integron | - | - | 1472484..1513803 | 41319 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 111 a.a. Molecular weight: 12906.76 Da Isoelectric Point: 10.0960
>T50207 WP_012600340.1 NZ_CP009984:1500908-1501240 [Vibrio vulnificus]
MKSVFVESTIFEKYRNEYLSDDEFRLFQAELMSNPKQGDVIQGTGGLRKIRVASKGKGKRGGSRVIYYFLDEKRRFYLLT
IYGKNEMSDLTADQKKQLKAFMEAWRNEQS
MKSVFVESTIFEKYRNEYLSDDEFRLFQAELMSNPKQGDVIQGTGGLRKIRVASKGKGKRGGSRVIYYFLDEKRRFYLLT
IYGKNEMSDLTADQKKQLKAFMEAWRNEQS
Download Length: 333 bp
>T50207 NZ_CP009984:1500908-1501240 [Vibrio vulnificus]
ATGAAAAGTGTATTTGTCGAATCAACCATATTTGAAAAGTACCGTAATGAATATCTCAGCGATGATGAGTTTAGGCTTTT
TCAAGCTGAGTTAATGTCTAACCCGAAGCAGGGTGACGTGATTCAAGGTACAGGTGGTTTGCGAAAGATTCGAGTTGCAA
GTAAAGGTAAGGGCAAGCGTGGTGGTTCTCGCGTTATCTATTACTTCCTCGATGAAAAGCGTCGTTTCTACTTGCTGACG
ATTTACGGCAAGAATGAAATGTCCGACTTAACCGCAGACCAAAAGAAACAACTAAAGGCTTTTATGGAGGCGTGGCGTAA
TGAGCAGTCGTGA
ATGAAAAGTGTATTTGTCGAATCAACCATATTTGAAAAGTACCGTAATGAATATCTCAGCGATGATGAGTTTAGGCTTTT
TCAAGCTGAGTTAATGTCTAACCCGAAGCAGGGTGACGTGATTCAAGGTACAGGTGGTTTGCGAAAGATTCGAGTTGCAA
GTAAAGGTAAGGGCAAGCGTGGTGGTTCTCGCGTTATCTATTACTTCCTCGATGAAAAGCGTCGTTTCTACTTGCTGACG
ATTTACGGCAAGAATGAAATGTCCGACTTAACCGCAGACCAAAAGAAACAACTAAAGGCTTTTATGGAGGCGTGGCGTAA
TGAGCAGTCGTGA
Antitoxin
Download Length: 105 a.a. Molecular weight: 11677.15 Da Isoelectric Point: 6.3290
>AT50207 WP_060531655.1 NZ_CP009984:1501227-1501541 [Vibrio vulnificus]
MSSRDLFAELSSALVEAKEHSEGKLTLKTHQVNDISELNISPDEIVSIREQFNMSRGVFARLLHTSSRTLENWEQGRSAP
NGQAVTLLKLVQRHPETLSHIAEL
MSSRDLFAELSSALVEAKEHSEGKLTLKTHQVNDISELNISPDEIVSIREQFNMSRGVFARLLHTSSRTLENWEQGRSAP
NGQAVTLLKLVQRHPETLSHIAEL
Download Length: 315 bp
>AT50207 NZ_CP009984:1501227-1501541 [Vibrio vulnificus]
ATGAGCAGTCGTGATTTATTTGCAGAGTTAAGTTCAGCACTTGTTGAGGCTAAAGAGCATTCAGAAGGCAAGCTTACCCT
TAAAACTCATCAAGTTAACGACATCAGTGAGTTAAATATCTCACCTGATGAAATCGTGAGTATTCGAGAGCAATTTAATA
TGTCTCGTGGTGTGTTTGCTCGTTTGTTGCACACGTCATCTCGTACGTTAGAAAACTGGGAGCAAGGGCGTAGCGCACCA
AATGGACAAGCAGTAACCCTTCTAAAGTTGGTTCAGCGTCACCCAGAAACCCTGTCGCACATCGCTGAGCTATAA
ATGAGCAGTCGTGATTTATTTGCAGAGTTAAGTTCAGCACTTGTTGAGGCTAAAGAGCATTCAGAAGGCAAGCTTACCCT
TAAAACTCATCAAGTTAACGACATCAGTGAGTTAAATATCTCACCTGATGAAATCGTGAGTATTCGAGAGCAATTTAATA
TGTCTCGTGGTGTGTTTGCTCGTTTGTTGCACACGTCATCTCGTACGTTAGAAAACTGGGAGCAAGGGCGTAGCGCACCA
AATGGACAAGCAGTAACCCTTCTAAAGTTGGTTCAGCGTCACCCAGAAACCCTGTCGCACATCGCTGAGCTATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|