Detailed information of TA system TA048851

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): higBA (relBE)/HigB-HigA
• Location: 989865..990462
• Replicon: chromosome
• Accession: NZ_CP009421
• Organism: Neisseria meningitidis strain NM3683

Toxin (Protein)

• Gene name: higB
• Uniprot ID: A0A0Y6JZK6
• Locus tag: LC14_RS05305
• Protein ID: WP_002242826.1
• Coordinates: 990184..990462 (-)
• Length: 93 a.a.

Antitoxin (Protein)

• Gene name: higA
• Uniprot ID: -
• Locus tag: LC14_RS05300
• Protein ID: WP_002221020.1
• Coordinates: 989865..990176 (-)
• Length: 104 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
LC14_RS13810	985732..985896	+	165	WP_002224559.1	baseplate J/gp47 family protein	-
LC14_RS05285	985896..986507	+	612	WP_002224558.1	baseplate J/gp47 family protein	-
LC14_RS05290	986504..987064	+	561	WP_002213590.1	YmfQ family protein	-
LC14_RS05295	987075..989048	+	1974	WP_002248050.1	pyocin knob domain-containing protein	-
LC14_RS05300	989865..990176	-	312	WP_002221020.1	HigA family addiction module antidote protein	Antitoxin
LC14_RS05305	990184..990462	-	279	WP_002242826.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
LC14_RS05310	990547..991152	+	606	WP_002219301.1	hypothetical protein	-
LC14_RS05315	991131..991427	+	297	WP_002221017.1	hypothetical protein	-
LC14_RS05320	991424..991633	+	210	WP_002222487.1	hypothetical protein	-
LC14_RS05325	991743..992886	-	1144	Protein_1005	ABC transporter ATP-binding protein/permease	-
LC14_RS05340	993328..993975	-	648	WP_002217218.1	DUF799 domain-containing protein	-
LC14_RS05345	993972..994340	-	369	WP_002219297.1	DUF4810 domain-containing protein	-
LC14_RS05350	994350..995021	-	672	WP_002217215.1	CsgG/HfaB family protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Integrative and Conjugative Element	-	-	822901..997142	174241
	-	flank	IS/Tn	-	-	984702..985667	965

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin HigB-1 (4-92)

Antitoxin

• Toxin-antitoxin system, antidote protein, HigA (3-80)

Sequences

Toxin

Protein

• Length: 93 a.a.
• Molecular weight: 10237.66 Da
• Isoelectric Point: 10.0980

>T48851 WP_002242826.1 NZ_CP009421:c990462-990184 [Neisseria meningitidis]
MIVSFKHKGLERFFKTGSLSGIQAGHSVKLNLLLTALNAAQTPSDMAVPSWNLHPLKGSLSGHWAVKVNGNWRLTFRFND
GNAEVVDYQDYH

Nucleotide

• Length: 279 bp

>T48851 NZ_CP009421:c990462-990184 [Neisseria meningitidis]
ATGATTGTTTCTTTCAAACACAAAGGGCTTGAACGCTTTTTTAAAACAGGCTCGCTATCGGGCATCCAAGCCGGGCATTC
CGTCAAACTGAATCTGCTTCTAACCGCGCTGAATGCCGCGCAAACGCCTTCGGATATGGCTGTGCCGAGTTGGAATCTTC
ATCCCCTCAAGGGCAGTTTGTCGGGACATTGGGCGGTTAAAGTCAACGGAAATTGGCGTTTGACTTTTCGTTTCAACGAC
GGCAATGCCGAAGTTGTCGATTATCAGGATTATCACTAG

Antitoxin

Protein

• Length: 104 a.a.
• Molecular weight: 11476.32 Da
• Isoelectric Point: 10.5523

>AT48851 WP_002221020.1 NZ_CP009421:c990176-989865 [Neisseria meningitidis]
MKMHNPAHPGLVLKEYINGASITDIAKRLGVSRVALSRIVNAQSSITPEMAVRLSQLLNTSPDFWLNMQAGYDLWQIRQR
KTFDIAPLFPEPPLSSMQTGARA

Nucleotide

• Length: 312 bp

>AT48851 NZ_CP009421:c990176-989865 [Neisseria meningitidis]
ATGAAAATGCACAATCCTGCCCACCCGGGCCTTGTTTTAAAAGAGTATATTAACGGTGCAAGCATTACCGATATAGCGAA
ACGCCTGGGTGTCAGCCGGGTTGCCTTATCGCGCATTGTCAACGCCCAATCTTCGATTACGCCCGAGATGGCGGTTCGTT
TAAGCCAACTGCTCAATACTTCGCCTGATTTTTGGCTGAATATGCAGGCCGGTTATGATTTGTGGCAAATCAGGCAACGC
AAAACTTTTGATATTGCGCCCTTATTTCCCGAACCGCCTTTGTCTTCGATGCAAACAGGTGCAAGGGCTTAA

Structures

Toxin

• AlphaFold DB: A0A0Y6JZK6