Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2497901..2498424 Replicon chromosome
Accession NZ_CP009361
Organism Staphylococcus aureus strain ATCC 25923

Toxin (Protein)


Gene name yoeB Uniprot ID A0A2W3LFI1
Locus tag KQ76_RS12630 Protein ID WP_000074047.1
Coordinates 2497901..2498167 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID A0A2S6D1W5
Locus tag KQ76_RS12635 Protein ID WP_000587617.1
Coordinates 2498167..2498424 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KQ76_RS12610 2493111..2494298 - 1188 WP_000026190.1 MFS transporter -
KQ76_RS12615 2494692..2495468 - 777 WP_000072154.1 iron export ABC transporter permease subunit FetB -
KQ76_RS12620 2495461..2496123 - 663 WP_000923514.1 ATP-binding cassette domain-containing protein -
KQ76_RS12625 2496469..2497545 - 1077 WP_001076679.1 M42 family metallopeptidase -
KQ76_RS12630 2497901..2498167 - 267 WP_000074047.1 Txe/YoeB family addiction module toxin Toxin
KQ76_RS12635 2498167..2498424 - 258 WP_000587617.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
KQ76_RS12645 2498784..2499239 + 456 WP_000732090.1 YehR family lipoprotein -
KQ76_RS12650 2499407..2500984 - 1578 WP_000143489.1 FMN-binding glutamate synthase family protein -
KQ76_RS12655 2501180..2501929 + 750 WP_000072447.1 CPBP family intramembrane metalloprotease -
KQ76_RS12660 2502153..2503346 - 1194 WP_000675407.1 MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(4-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10662.26 Da        Isoelectric Point: 10.1384

>T48806 WP_000074047.1 NZ_CP009361:c2498167-2497901 [Staphylococcus aureus]
MSNYTVKIKNSAKSDLKKIKHSYLKKSFLEIVETLKNDPYKITQSFEKLEPKYLERYSRRINHQHRIVYTVDDRNKEVLI
LSAWSHYD

Download         Length: 267 bp

>T48806 NZ_CP009361:c2498167-2497901 [Staphylococcus aureus]
ATGAGCAATTACACGGTTAAGATTAAAAATTCAGCGAAATCAGATTTAAAGAAAATAAAACATTCTTATTTAAAGAAGTC
ATTTTTAGAAATTGTTGAGACTTTAAAAAATGATCCGTATAAAATAACACAATCCTTTGAAAAATTAGAACCTAAATATT
TAGAGCGATATTCAAGAAGAATTAACCATCAGCACAGGATCGTCTATACCGTAGATGATCGAAATAAAGAAGTATTAATA
CTATCGGCATGGTCACATTATGATTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9747.71 Da        Isoelectric Point: 4.1353

>AT48806 WP_000587617.1 NZ_CP009361:c2498424-2498167 [Staphylococcus aureus]
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETIYLESTGTMDKVREREKDSSGTTNIDDI
DWDNL

Download         Length: 258 bp

>AT48806 NZ_CP009361:c2498424-2498167 [Staphylococcus aureus]
ATGATTATCACTAGCCCTACAGAAGCGAGAAAAGATTTTTATCAATTACTAAAAAATGTTAATAATAATCACGAACCAAT
TTATATTAGTGGCAATAATGCCGAAAATAATGCTGTGATTATAGGTTTAGAAGATTGGAAAAGTATACAAGAGACAATAT
ATCTTGAATCTACTGGTACAATGGACAAAGTAAGAGAAAGAGAAAAAGATAGTAGTGGTACAACAAATATAGATGATATT
GATTGGGATAATCTGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2W3LFI1

Antitoxin

Source ID Structure
AlphaFold DB A0A2S6D1W5

References