Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | prlF-yhaV (relBE)/YhaV-PrlF |
| Location | 5233970..5234769 | Replicon | chromosome |
| Accession | NZ_CP007799 | ||
| Organism | Escherichia coli Nissle 1917 | ||
Toxin (Protein)
| Gene name | yhaV | Uniprot ID | Q8FDB4 |
| Locus tag | ECOLIN_RS26080 | Protein ID | WP_000347252.1 |
| Coordinates | 5233970..5234434 (-) | Length | 155 a.a. |
Antitoxin (Protein)
| Gene name | prlF | Uniprot ID | S1PPV5 |
| Locus tag | ECOLIN_RS26085 | Protein ID | WP_001296435.1 |
| Coordinates | 5234434..5234769 (-) | Length | 112 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECOLIN_RS26060 | 5230251..5230493 | - | 243 | Protein_4931 | acetyl-CoA carboxylase biotin carboxyl carrier protein | - |
| ECOLIN_RS26065 (ECOLIN_25280) | 5230491..5231150 | + | 660 | Protein_4932 | glucose PTS transporter subunit EIIB | - |
| ECOLIN_RS26070 (ECOLIN_25285) | 5231203..5232663 | - | 1461 | Protein_4933 | ferric-rhodotorulic acid/ferric-coprogen receptor FhuE | - |
| ECOLIN_RS29965 | 5232657..5232773 | - | 117 | Protein_4934 | class II D-tagatose-bisphosphate aldolase, non-catalytic subunit | - |
| ECOLIN_RS26075 (ECOLIN_25290) | 5233022..5233846 | + | 825 | WP_000072188.1 | aga operon transcriptional regulator AgaR | - |
| ECOLIN_RS26080 (ECOLIN_25295) | 5233970..5234434 | - | 465 | WP_000347252.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin |
| ECOLIN_RS26085 (ECOLIN_25300) | 5234434..5234769 | - | 336 | WP_001296435.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin |
| ECOLIN_RS26090 (ECOLIN_25305) | 5234918..5235769 | - | 852 | Protein_4938 | UxaA family hydrolase | - |
| ECOLIN_RS26095 (ECOLIN_25310) | 5235746..5236864 | + | 1119 | WP_128971752.1 | 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG | - |
| ECOLIN_RS31880 | 5237055..5237138 | + | 84 | Protein_4940 | type II toxin-antitoxin system HigB family toxin | - |
| ECOLIN_RS26100 (ECOLIN_25315) | 5237135..5237551 | + | 417 | WP_000560266.1 | type II toxin-antitoxin system antitoxin HigA | - |
| ECOLIN_RS26105 (ECOLIN_25320) | 5237596..5238330 | - | 735 | Protein_4942 | NADPH-dependent 2,4-dienoyl-CoA reductase | - |
| ECOLIN_RS32225 | 5238576..5238689 | - | 114 | WP_001161660.1 | DUF957 domain-containing protein | - |
| ECOLIN_RS26110 (ECOLIN_25325) | 5238702..5238908 | - | 207 | WP_128971753.1 | hypothetical protein | - |
| ECOLIN_RS26115 (ECOLIN_25330) | 5238905..5239279 | - | 375 | WP_000854814.1 | type IV toxin-antitoxin system toxin CbtA | - |
| ECOLIN_RS26120 (ECOLIN_25335) | 5239368..5239736 | - | 369 | WP_038427208.1 | type IV toxin-antitoxin system toxin CbtA | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 155 a.a. Molecular weight: 17750.11 Da Isoelectric Point: 9.4947
>T47054 WP_000347252.1 NZ_CP007799:c5234434-5233970 [Escherichia coli Nissle 1917]
MDFPQRVNGWALYAHPCFQETYDALVAEVEALKGKDPENYQRKAATKLLAVVHKVIEEHITVNPSSPAFRHGKSLGSGKN
KDWSRVKFGAGRYRLFFRYSEKEKVIILGWMNDENTLRTYGKKTDAYTVFSKMLKRGHPPADWESLTQETEESH
MDFPQRVNGWALYAHPCFQETYDALVAEVEALKGKDPENYQRKAATKLLAVVHKVIEEHITVNPSSPAFRHGKSLGSGKN
KDWSRVKFGAGRYRLFFRYSEKEKVIILGWMNDENTLRTYGKKTDAYTVFSKMLKRGHPPADWESLTQETEESH
Download Length: 465 bp
>T47054 NZ_CP007799:c5234434-5233970 [Escherichia coli Nissle 1917]
ATGGATTTTCCACAAAGGGTTAATGGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTACGATGCTTTAGTTGC
CGAAGTCGAGGCATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCTGCCACAAAGTTATTGGCGGTGGTCCATA
AAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAAT
AAAGACTGGTCACGGGTAAAATTTGGCGCTGGTCGCTATCGTCTCTTCTTTCGTTACAGTGAAAAAGAGAAAGTCATCAT
TCTGGGATGGATGAACGATGAAAACACGCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGTAAAATGT
TAAAAAGAGGACATCCTCCTGCCGACTGGGAAAGCCTCACCCAAGAGACAGAAGAAAGCCATTGA
ATGGATTTTCCACAAAGGGTTAATGGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTACGATGCTTTAGTTGC
CGAAGTCGAGGCATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCTGCCACAAAGTTATTGGCGGTGGTCCATA
AAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAAT
AAAGACTGGTCACGGGTAAAATTTGGCGCTGGTCGCTATCGTCTCTTCTTTCGTTACAGTGAAAAAGAGAAAGTCATCAT
TCTGGGATGGATGAACGATGAAAACACGCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGTAAAATGT
TAAAAAGAGGACATCCTCCTGCCGACTGGGAAAGCCTCACCCAAGAGACAGAAGAAAGCCATTGA
Antitoxin
Download Length: 112 a.a. Molecular weight: 12321.92 Da Isoelectric Point: 4.5392
>AT47054 WP_001296435.1 NZ_CP007799:c5234769-5234434 [Escherichia coli Nissle 1917]
MPANARSNAVLTTESKVTIRGQTTIPAPVREALKLKPGLDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNN
PQKTRPFDIQQGKKLVAGMDVNIDDEIGDDE
MPANARSNAVLTTESKVTIRGQTTIPAPVREALKLKPGLDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNN
PQKTRPFDIQQGKKLVAGMDVNIDDEIGDDE
Download Length: 336 bp
>AT47054 NZ_CP007799:c5234769-5234434 [Escherichia coli Nissle 1917]
ATGCCCGCTAATGCTCGCTCTAACGCTGTACTGACCACTGAATCAAAGGTCACTATACGCGGACAAACAACTATCCCCGC
GCCAGTGCGTGAGGCCTTAAAACTGAAGCCTGGCCTGGACAGCATTCATTACGAAATTCTGCCTGGTGGGCAAGTATTTA
TGTGCCGACTGGGAGATGAACAGGAGGATCATACTATGAATGCATTTTTGCGTTTTCTGGATGCAGATATCCAGAACAAC
CCGCAAAAAACTCGTCCATTCGACATTCAACAAGGAAAGAAACTTGTCGCTGGCATGGACGTCAACATTGACGATGAGAT
TGGCGACGACGAATAA
ATGCCCGCTAATGCTCGCTCTAACGCTGTACTGACCACTGAATCAAAGGTCACTATACGCGGACAAACAACTATCCCCGC
GCCAGTGCGTGAGGCCTTAAAACTGAAGCCTGGCCTGGACAGCATTCATTACGAAATTCTGCCTGGTGGGCAAGTATTTA
TGTGCCGACTGGGAGATGAACAGGAGGATCATACTATGAATGCATTTTTGCGTTTTCTGGATGCAGATATCCAGAACAAC
CCGCAAAAAACTCGTCCATTCGACATTCAACAAGGAAAGAAACTTGTCGCTGGCATGGACGTCAACATTGACGATGAGAT
TGGCGACGACGAATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|