Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2499553..2500070 Replicon chromosome
Accession NZ_CP007676
Organism Staphylococcus aureus strain HUV05

Toxin (Protein)


Gene name yoeB Uniprot ID T1YC79
Locus tag ER12_RS12830 Protein ID WP_000113262.1
Coordinates 2499553..2499819 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID T1YB60
Locus tag ER12_RS12835 Protein ID WP_000584499.1
Coordinates 2499819..2500070 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ER12_RS12805 2494979..2495515 - 537 WP_000169317.1 GNAT family N-acetyltransferase -
ER12_RS12810 2495748..2496572 - 825 WP_000572040.1 formate/nitrite transporter family protein -
ER12_RS12815 2496789..2496971 - 183 WP_000230294.1 hypothetical protein -
ER12_RS12820 2497055..2497522 - 468 WP_000153344.1 SRPBCC domain-containing protein -
ER12_RS12825 2497708..2499258 - 1551 WP_048520761.1 zinc ABC transporter substrate-binding lipoprotein AdcA -
ER12_RS15820 2499447..2499518 - 72 Protein_2427 hypothetical protein -
ER12_RS12830 2499553..2499819 - 267 WP_000113262.1 Txe/YoeB family addiction module toxin Toxin
ER12_RS12835 2499819..2500070 - 252 WP_000584499.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
ER12_RS12840 2500235..2500336 - 102 WP_001791744.1 hypothetical protein -
ER12_RS12845 2500343..2500942 - 600 WP_000162813.1 DsbA family protein -
ER12_RS12850 2500961..2501320 - 360 WP_000819847.1 DUF4467 domain-containing protein -
ER12_RS12855 2501575..2502825 + 1251 WP_001012222.1 FemA/FemB family glycyltransferase FmhA -
ER12_RS12860 2502922..2503653 - 732 WP_000615461.1 amino acid ABC transporter ATP-binding protein -
ER12_RS12865 2503650..2504369 - 720 WP_000479576.1 amino acid ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10437.95 Da        Isoelectric Point: 9.9143

>T46882 WP_000113262.1 NZ_CP007676:c2499819-2499553 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY

Download         Length: 267 bp

>T46882 NZ_CP007676:c2499819-2499553 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9433.60 Da        Isoelectric Point: 4.3407

>AT46882 WP_000584499.1 NZ_CP007676:c2500070-2499819 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV

Download         Length: 252 bp

>AT46882 NZ_CP007676:c2500070-2499819 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7CUA
PDB 6L8E

Antitoxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7BWF
PDB 6L8E
AlphaFold DB T1YB60

References