Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | I | Classification (family/domain) | ralRA/- |
Location | 2086056..2086427 | Replicon | chromosome |
Accession | NZ_CP007392 | ||
Organism | Escherichia coli strain ST2747 |
Toxin (Protein)
Gene name | ralR | Uniprot ID | A0A3K0WCG2 |
Locus tag | CF58_RS10060 | Protein ID | WP_032159264.1 |
Coordinates | 2086233..2086427 (-) | Length | 65 a.a. |
Antitoxin (RNA)
Gene name | ralA | ||
Locus tag | - | ||
Coordinates | 2086056..2086234 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
CF58_RS10035 | 2082011..2083384 | + | 1374 | WP_001599773.1 | ATP-dependent RNA helicase DbpA | - |
CF58_RS10040 | 2083513..2084448 | - | 936 | WP_001157407.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
CF58_RS25465 | 2084500..2085735 | - | 1236 | WP_001516465.1 | site-specific integrase | - |
CF58_RS10050 | 2085737..2085952 | - | 216 | WP_000079604.1 | excisionase XisR | - |
CF58_RS10055 | 2086052..2086240 | - | 189 | WP_001605349.1 | DUF1187 family protein | - |
- | 2086056..2086234 | + | 179 | NuclAT_0 | - | Antitoxin |
- | 2086056..2086234 | + | 179 | NuclAT_0 | - | Antitoxin |
- | 2086056..2086234 | + | 179 | NuclAT_0 | - | Antitoxin |
- | 2086056..2086234 | + | 179 | NuclAT_0 | - | Antitoxin |
CF58_RS10060 | 2086233..2086427 | - | 195 | WP_032159264.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin |
CF58_RS10065 | 2086491..2087543 | - | 1053 | WP_001004422.1 | recombinase RecT | - |
CF58_RS10070 | 2087555..2090626 | - | 3072 | WP_001605350.1 | exodeoxyribonuclease VIII | - |
CF58_RS10075 | 2090728..2091003 | - | 276 | WP_001344816.1 | hypothetical protein | - |
CF58_RS10080 | 2091078..2091248 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Prophage | - | - | 2084500..2246945 | 162445 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 65 a.a. Molecular weight: 7063.03 Da Isoelectric Point: 9.2886
>T46327 WP_032159264.1 NZ_CP007392:c2086427-2086233 [Escherichia coli]
MRYEKVKPCPFCGCLSVTVKAISGYYRAKCNGCESRTGYGGSEKEALERWNKRTTGNNNGGVHV
MRYEKVKPCPFCGCLSVTVKAISGYYRAKCNGCESRTGYGGSEKEALERWNKRTTGNNNGGVHV
Download Length: 195 bp
>T46327 NZ_CP007392:c2086427-2086233 [Escherichia coli]
ATGCGGTATGAAAAAGTCAAACCATGCCCTTTTTGTGGTTGTCTATCAGTAACGGTAAAAGCCATTTCAGGATATTACCG
CGCGAAGTGTAACGGATGCGAATCCCGAACCGGCTATGGTGGAAGTGAAAAAGAAGCACTCGAACGATGGAATAAACGAA
CCACTGGAAATAATAATGGAGGTGTTCATGTATAA
ATGCGGTATGAAAAAGTCAAACCATGCCCTTTTTGTGGTTGTCTATCAGTAACGGTAAAAGCCATTTCAGGATATTACCG
CGCGAAGTGTAACGGATGCGAATCCCGAACCGGCTATGGTGGAAGTGAAAAAGAAGCACTCGAACGATGGAATAAACGAA
CCACTGGAAATAATAATGGAGGTGTTCATGTATAA
Antitoxin
Download Length: 179 bp
>AT46327 NZ_CP007392:2086056-2086234 [Escherichia coli]
GACGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAACCGCCTGCTTCTTTTTTACCTGA
GAGCATTTTTTCGCATTCTGATTTGGTTAATTTTGTTTTTGAGTACCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTT
CAATAGTGGCGGTAATTTT
GACGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAACCGCCTGCTTCTTTTTTACCTGA
GAGCATTTTTTCGCATTCTGATTTGGTTAATTTTGTTTTTGAGTACCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTT
CAATAGTGGCGGTAATTTT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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