Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 1871968..1872707 Replicon chromosome
Accession NZ_CP007205
Organism Pasteurella multocida subsp. multocida PMTB2.1

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag AW43_RS08780 Protein ID WP_061406326.1
Coordinates 1871968..1872294 (+) Length 109 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag AW43_RS08785 Protein ID WP_005757699.1
Coordinates 1872381..1872707 (+) Length 109 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AW43_RS08755 1867285..1867971 + 687 WP_061406323.1 hypothetical protein -
AW43_RS08760 1868025..1869554 - 1530 WP_061406324.1 YifB family Mg chelatase-like AAA ATPase -
AW43_RS08765 1869663..1870280 - 618 WP_005724253.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
AW43_RS08770 1870391..1871260 + 870 WP_061406325.1 VirK/YbjX family protein -
AW43_RS08775 1871334..1871810 - 477 WP_042742721.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
AW43_RS08780 1871968..1872294 + 327 WP_061406326.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
AW43_RS08785 1872381..1872707 + 327 WP_005757699.1 HigA family addiction module antidote protein Antitoxin
AW43_RS08790 1872762..1874282 - 1521 WP_061406327.1 DUF560 domain-containing protein -
AW43_RS08795 1874341..1874931 - 591 WP_061406438.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
AW43_RS08800 1874994..1876004 - 1011 WP_061406328.1 hypothetical protein -
AW43_RS08805 1876240..1877271 - 1032 WP_061406329.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-1

(12-104)

Antitoxin

Toxin-antitoxin system, antidote protein, HigA

(1-102)


Sequences

Toxin        


Download         Length: 109 a.a.        Molecular weight: 12923.75 Da        Isoelectric Point: 9.6705

>T46161 WP_061406326.1 NZ_CP007205:1871968-1872294 [Pasteurella multocida subsp. multocida PMTB2.1]
MDRVRFNLTEDSFQDKYLYEYFLYGSKHKNIPSDIENTLAHKLDMLDSANTLSDLRSQPGNKLEKLEPKTSGLYSIRVNV
KYRLIFKYKESNFPKITELRLDKHQYRL

Download         Length: 327 bp

>T46161 NZ_CP007205:1871968-1872294 [Pasteurella multocida subsp. multocida PMTB2.1]
ATGGACAGAGTCCGATTTAATCTTACGGAAGATAGCTTCCAAGACAAGTATCTGTATGAGTATTTTTTATATGGAAGTAA
GCATAAAAATATTCCAAGTGATATAGAAAATACGCTAGCGCATAAATTAGATATGTTAGATAGCGCAAATACTTTGAGCG
ATTTGCGAAGTCAACCAGGTAATAAATTGGAAAAATTGGAGCCTAAAACGAGTGGGCTATATTCTATCAGAGTGAATGTG
AAATATCGTTTAATATTTAAATATAAAGAAAGTAATTTTCCAAAAATAACAGAGTTGAGATTAGATAAACATCAATATAG
ATTATAA

Antitoxin


Download         Length: 109 a.a.        Molecular weight: 12377.41 Da        Isoelectric Point: 7.2034

>AT46161 WP_005757699.1 NZ_CP007205:1872381-1872707 [Pasteurella multocida subsp. multocida PMTB2.1]
MSRVQRKPSTVGDILLDEYLVPLNLKIADLATMLDVHRNTASALVNNNTKLSLEMALKLAKLFNTSPEFWLNLQMKLDLW
EIENNARFQESLKKISSIDQHNLLEKIA

Download         Length: 327 bp

>AT46161 NZ_CP007205:1872381-1872707 [Pasteurella multocida subsp. multocida PMTB2.1]
ATGAGTAGAGTACAAAGAAAGCCATCAACAGTGGGTGATATTTTATTAGATGAATATTTAGTTCCACTAAATTTGAAAAT
TGCAGATTTAGCTACAATGTTAGATGTTCATCGTAATACAGCGAGTGCACTCGTTAATAATAATACTAAATTGTCTTTAG
AAATGGCACTGAAACTAGCAAAACTATTTAATACAAGTCCTGAGTTTTGGTTAAATTTACAAATGAAATTAGACTTATGG
GAAATTGAAAACAATGCTAGGTTTCAAGAAAGTTTAAAGAAAATTTCGTCTATTGATCAGCATAATCTGTTAGAAAAAAT
CGCTTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References