Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-YefM
Location 327531..328033 Replicon chromosome
Accession NZ_CP003915
Organism Advenella mimigardefordensis DPN7

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag MIM_RS01500 Protein ID WP_025370991.1
Coordinates 327779..328033 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag MIM_RS01495 Protein ID WP_025370990.1
Coordinates 327531..327782 (+) Length 84 a.a.

Genomic Context

MIM_RS01490MIM_RS01495MIM_RS01500MIM_RS01505MIM_RS01515MIM_RS01520MIM_RS01525MIM_RS21935MIM_RS01510
Location: 325144..327318 (2175 bp)
Type: Others
Protein ID: WP_025370989.1
Location: 327531..327782 (252 bp)
Type: Antitoxin
Protein ID: WP_025370990.1
Location: 327779..328033 (255 bp)
Type: Toxin
Protein ID: WP_025370991.1
Location: 328171..329022 (852 bp)
Type: Others
Protein ID: WP_025370992.1
Location: 329791..330345 (555 bp)
Type: Others
Protein ID: WP_144084566.1
Location: 330435..332081 (1647 bp)
Type: Others
Protein ID: WP_052342257.1
Location: 332169..332975 (807 bp)
Type: Others
Protein ID: WP_025370996.1
Location: 323114..324964 (1851 bp)
Type: Others
Protein ID: WP_025370988.1
Location: 329034..329465 (432 bp)
Type: Others
Protein ID: WP_025370993.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
MIM_RS21935323114..324964-1851WP_025370988.1ATP-dependent helicase-
MIM_RS01490325144..327318+2175WP_025370989.1malate synthase G-
MIM_RS01495327531..327782+252WP_025370990.1YoeB-YefM toxin-antitoxin system antitoxin YefMAntitoxin
MIM_RS01500327779..328033+255WP_025370991.1Txe/YoeB family addiction module toxinToxin
MIM_RS01505328171..329022+852WP_025370992.1sulfurtransferase-
MIM_RS01510329034..329465-432WP_025370993.1VOC family protein-
MIM_RS01515329791..330345+555WP_144084566.1hypothetical protein-
MIM_RS01520330435..332081+1647WP_052342257.1PepSY domain-containing protein-
MIM_RS01525332169..332975+807WP_025370996.1phosphodiester glycosidase family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(2-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10091.57 Da        Isoelectric Point: 7.3192

>T44865 WP_025370991.1 NZ_CP003915:327779-328033 [Advenella mimigardefordensis DPN7]
VKLKWSEEAWEDYLYWQDADKRMVKKINDLLNDTCRTPFEGIGKPEPLRHHLVGYWSRRITLEHRLVYAVADDALLIAAC
RYHY

Download         Length: 255 bp

>T44865 NZ_CP003915:327779-328033 [Advenella mimigardefordensis DPN7]
GTGAAGCTGAAGTGGTCGGAAGAAGCGTGGGAAGACTATTTGTACTGGCAGGACGCCGATAAACGAATGGTTAAAAAAAT
AAACGACCTGTTGAACGATACCTGCCGTACGCCATTTGAAGGTATTGGCAAACCCGAGCCACTACGACATCATCTTGTCG
GTTATTGGTCAAGACGGATTACCTTGGAGCACAGGTTGGTCTATGCCGTGGCTGATGATGCTTTATTGATCGCCGCCTGT
CGTTATCATTATTGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9246.45 Da        Isoelectric Point: 5.0180

>AT44865 WP_025370990.1 NZ_CP003915:327531-327782 [Advenella mimigardefordensis DPN7]
MRTVSYSQARQNLSATMIQAAEDKAPVLITRQNGDACVLMSLEEYNSLQETAYLLQSPANARRLMDSIENLKSGNARERG
LIE

Download         Length: 252 bp

>AT44865 NZ_CP003915:327531-327782 [Advenella mimigardefordensis DPN7]
ATGAGAACCGTTAGCTATAGTCAAGCCAGGCAGAACCTGTCGGCCACAATGATTCAGGCTGCAGAGGATAAGGCGCCTGT
TTTGATCACGCGCCAGAATGGCGATGCCTGCGTTCTGATGTCGCTGGAAGAATACAACTCGCTGCAGGAAACCGCTTACT
TGCTCCAGTCTCCCGCCAATGCCCGGCGATTAATGGACTCTATCGAGAATCTGAAAAGTGGTAATGCCAGAGAAAGAGGG
TTGATTGAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References