Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-YefM |
| Location | 1581357..1581859 | Replicon | chromosome |
| Accession | NZ_AP028142 | ||
| Organism | Polynucleobacter sp. HIN11 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | - |
| Locus tag | QUE60_RS07955 | Protein ID | WP_286226667.1 |
| Coordinates | 1581357..1581623 (-) | Length | 89 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | - |
| Locus tag | QUE60_RS07960 | Protein ID | WP_215370129.1 |
| Coordinates | 1581617..1581859 (-) | Length | 81 a.a. |
Genomic Context
Location: 1578256..1578456 (201 bp)
Type: Others
Protein ID: WP_286226662.1
Type: Others
Protein ID: WP_286226662.1
Location: 1578464..1578904 (441 bp)
Type: Others
Protein ID: WP_286226663.1
Type: Others
Protein ID: WP_286226663.1
Location: 1578901..1579650 (750 bp)
Type: Others
Protein ID: WP_286226664.1
Type: Others
Protein ID: WP_286226664.1
Location: 1579775..1580281 (507 bp)
Type: Others
Protein ID: WP_286226665.1
Type: Others
Protein ID: WP_286226665.1
Location: 1580293..1581216 (924 bp)
Type: Others
Protein ID: WP_286226666.1
Type: Others
Protein ID: WP_286226666.1
Location: 1582400..1583611 (1212 bp)
Type: Others
Protein ID: WP_286226669.1
Type: Others
Protein ID: WP_286226669.1
Location: 1584322..1585434 (1113 bp)
Type: Others
Protein ID: WP_286226671.1
Type: Others
Protein ID: WP_286226671.1
Location: 1585444..1586253 (810 bp)
Type: Others
Protein ID: WP_286226672.1
Type: Others
Protein ID: WP_286226672.1
Location: 1577104..1578192 (1089 bp)
Type: Others
Protein ID: WP_286226661.1
Type: Others
Protein ID: WP_286226661.1
Location: 1581357..1581623 (267 bp)
Type: Toxin
Protein ID: WP_286226667.1
Type: Toxin
Protein ID: WP_286226667.1
Location: 1581617..1581859 (243 bp)
Type: Antitoxin
Protein ID: WP_215370129.1
Type: Antitoxin
Protein ID: WP_215370129.1
Location: 1583637..1584017 (381 bp)
Type: Others
Protein ID: WP_286226670.1
Type: Others
Protein ID: WP_286226670.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE60_RS07925 (PHIN11_15340) | 1577104..1578192 | - | 1089 | WP_286226661.1 | alkene reductase | - |
| QUE60_RS07930 (PHIN11_15350) | 1578256..1578456 | + | 201 | WP_286226662.1 | hypothetical protein | - |
| QUE60_RS07935 (PHIN11_15360) | 1578464..1578904 | + | 441 | WP_286226663.1 | hypothetical protein | - |
| QUE60_RS07940 (PHIN11_15370) | 1578901..1579650 | + | 750 | WP_286226664.1 | molybdate ABC transporter substrate-binding protein | - |
| QUE60_RS07945 (PHIN11_15380) | 1579775..1580281 | + | 507 | WP_286226665.1 | lipid IV(A) palmitoyltransferase PagP | - |
| QUE60_RS07950 (PHIN11_15390) | 1580293..1581216 | + | 924 | WP_286226666.1 | DUF6268 family outer membrane beta-barrel protein | - |
| QUE60_RS07955 (PHIN11_15400) | 1581357..1581623 | - | 267 | WP_286226667.1 | Txe/YoeB family addiction module toxin | Toxin |
| QUE60_RS07960 (PHIN11_15410) | 1581617..1581859 | - | 243 | WP_215370129.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| QUE60_RS07965 (PHIN11_15420) | 1582400..1583611 | + | 1212 | WP_286226669.1 | tyrosine-type recombinase/integrase | - |
| QUE60_RS07970 (PHIN11_15430) | 1583637..1584017 | - | 381 | WP_286226670.1 | hypothetical protein | - |
| QUE60_RS07975 (PHIN11_15440) | 1584322..1585434 | + | 1113 | WP_286226671.1 | hypothetical protein | - |
| QUE60_RS07980 (PHIN11_15450) | 1585444..1586253 | + | 810 | WP_286226672.1 | hypothetical protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10301.00 Da Isoelectric Point: 10.4507
>T44579 WP_286226667.1 NZ_AP028142:c1581623-1581357 [Polynucleobacter sp. HIN11]
VVAWNLAYSKFALKDAKKLSAAGLRDKAQNLLDLLAVDPFQNPPPYEKLVGDLRGAYSRRINIQHRLVYEVFRKEKTVRI
LRMWTHYD
VVAWNLAYSKFALKDAKKLSAAGLRDKAQNLLDLLAVDPFQNPPPYEKLVGDLRGAYSRRINIQHRLVYEVFRKEKTVRI
LRMWTHYD
Download Length: 267 bp
>T44579 NZ_AP028142:c1581623-1581357 [Polynucleobacter sp. HIN11]
GTGGTAGCTTGGAATTTGGCCTATTCCAAGTTTGCCCTTAAAGACGCTAAAAAACTCTCAGCTGCTGGATTAAGAGATAA
AGCCCAGAATTTATTGGATCTATTAGCAGTAGATCCGTTTCAAAATCCGCCGCCATACGAAAAGTTGGTGGGGGATTTAA
GGGGTGCTTATTCTCGCAGAATCAATATTCAACATCGTTTAGTTTACGAGGTTTTTCGTAAAGAAAAGACTGTTCGTATT
TTGAGGATGTGGACCCACTACGATTAA
GTGGTAGCTTGGAATTTGGCCTATTCCAAGTTTGCCCTTAAAGACGCTAAAAAACTCTCAGCTGCTGGATTAAGAGATAA
AGCCCAGAATTTATTGGATCTATTAGCAGTAGATCCGTTTCAAAATCCGCCGCCATACGAAAAGTTGGTGGGGGATTTAA
GGGGTGCTTATTCTCGCAGAATCAATATTCAACATCGTTTAGTTTACGAGGTTTTTCGTAAAGAAAAGACTGTTCGTATT
TTGAGGATGTGGACCCACTACGATTAA
Antitoxin
Download Length: 81 a.a. Molecular weight: 8946.35 Da Isoelectric Point: 8.5552
>AT44579 WP_215370129.1 NZ_AP028142:c1581859-1581617 [Polynucleobacter sp. HIN11]
MTTLTASEARAGLYRLIDQTAETHKPVLISGKRSNAVLISEEDWSAIQETLYLLAIPGMRESIKESMAEPLAKSKRTLKW
MTTLTASEARAGLYRLIDQTAETHKPVLISGKRSNAVLISEEDWSAIQETLYLLAIPGMRESIKESMAEPLAKSKRTLKW
Download Length: 243 bp
>AT44579 NZ_AP028142:c1581859-1581617 [Polynucleobacter sp. HIN11]
ATGACCACATTAACCGCAAGTGAAGCGCGAGCAGGTTTATATCGCTTAATTGATCAAACTGCAGAAACACATAAGCCAGT
GCTTATTTCAGGCAAGCGCAGTAATGCCGTTTTAATTTCTGAAGAAGATTGGAGTGCCATTCAGGAAACGCTGTATCTAT
TAGCTATCCCAGGAATGCGCGAGTCCATTAAAGAATCCATGGCTGAGCCTTTGGCTAAGAGCAAAAGGACATTGAAGTGG
TAG
ATGACCACATTAACCGCAAGTGAAGCGCGAGCAGGTTTATATCGCTTAATTGATCAAACTGCAGAAACACATAAGCCAGT
GCTTATTTCAGGCAAGCGCAGTAATGCCGTTTTAATTTCTGAAGAAGATTGGAGTGCCATTCAGGAAACGCTGTATCTAT
TAGCTATCCCAGGAATGCGCGAGTCCATTAAAGAATCCATGGCTGAGCCTTTGGCTAAGAGCAAAAGGACATTGAAGTGG
TAG