Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-YefM |
| Location | 1581876..1582378 | Replicon | chromosome |
| Accession | NZ_AP028141 | ||
| Organism | Polynucleobacter sp. HIN10 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | - |
| Locus tag | QUE67_RS07975 | Protein ID | WP_286226667.1 |
| Coordinates | 1581876..1582142 (-) | Length | 89 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | - |
| Locus tag | QUE67_RS07980 | Protein ID | WP_215370129.1 |
| Coordinates | 1582136..1582378 (-) | Length | 81 a.a. |
Genomic Context
Location: 1578775..1578975 (201 bp)
Type: Others
Protein ID: WP_286226662.1
Type: Others
Protein ID: WP_286226662.1
Location: 1578983..1579423 (441 bp)
Type: Others
Protein ID: WP_286226663.1
Type: Others
Protein ID: WP_286226663.1
Location: 1579420..1580169 (750 bp)
Type: Others
Protein ID: WP_286226664.1
Type: Others
Protein ID: WP_286226664.1
Location: 1580294..1580800 (507 bp)
Type: Others
Protein ID: WP_286226665.1
Type: Others
Protein ID: WP_286226665.1
Location: 1580812..1581735 (924 bp)
Type: Others
Protein ID: WP_286226666.1
Type: Others
Protein ID: WP_286226666.1
Location: 1582919..1584130 (1212 bp)
Type: Others
Protein ID: WP_286226669.1
Type: Others
Protein ID: WP_286226669.1
Location: 1584841..1585953 (1113 bp)
Type: Others
Protein ID: WP_286226671.1
Type: Others
Protein ID: WP_286226671.1
Location: 1585963..1586772 (810 bp)
Type: Others
Protein ID: WP_286226672.1
Type: Others
Protein ID: WP_286226672.1
Location: 1577623..1578711 (1089 bp)
Type: Others
Protein ID: WP_286226661.1
Type: Others
Protein ID: WP_286226661.1
Location: 1581876..1582142 (267 bp)
Type: Toxin
Protein ID: WP_286226667.1
Type: Toxin
Protein ID: WP_286226667.1
Location: 1582136..1582378 (243 bp)
Type: Antitoxin
Protein ID: WP_215370129.1
Type: Antitoxin
Protein ID: WP_215370129.1
Location: 1584156..1584536 (381 bp)
Type: Others
Protein ID: WP_286226670.1
Type: Others
Protein ID: WP_286226670.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE67_RS07945 (PHIN10_15350) | 1577623..1578711 | - | 1089 | WP_286226661.1 | alkene reductase | - |
| QUE67_RS07950 (PHIN10_15360) | 1578775..1578975 | + | 201 | WP_286226662.1 | hypothetical protein | - |
| QUE67_RS07955 (PHIN10_15370) | 1578983..1579423 | + | 441 | WP_286226663.1 | hypothetical protein | - |
| QUE67_RS07960 (PHIN10_15380) | 1579420..1580169 | + | 750 | WP_286226664.1 | molybdate ABC transporter substrate-binding protein | - |
| QUE67_RS07965 (PHIN10_15390) | 1580294..1580800 | + | 507 | WP_286226665.1 | lipid IV(A) palmitoyltransferase PagP | - |
| QUE67_RS07970 (PHIN10_15400) | 1580812..1581735 | + | 924 | WP_286226666.1 | DUF6268 family outer membrane beta-barrel protein | - |
| QUE67_RS07975 (PHIN10_15410) | 1581876..1582142 | - | 267 | WP_286226667.1 | Txe/YoeB family addiction module toxin | Toxin |
| QUE67_RS07980 (PHIN10_15420) | 1582136..1582378 | - | 243 | WP_215370129.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| QUE67_RS07985 (PHIN10_15430) | 1582919..1584130 | + | 1212 | WP_286226669.1 | tyrosine-type recombinase/integrase | - |
| QUE67_RS07990 (PHIN10_15440) | 1584156..1584536 | - | 381 | WP_286226670.1 | hypothetical protein | - |
| QUE67_RS07995 (PHIN10_15450) | 1584841..1585953 | + | 1113 | WP_286226671.1 | hypothetical protein | - |
| QUE67_RS08000 (PHIN10_15460) | 1585963..1586772 | + | 810 | WP_286226672.1 | hypothetical protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10301.00 Da Isoelectric Point: 10.4507
>T44576 WP_286226667.1 NZ_AP028141:c1582142-1581876 [Polynucleobacter sp. HIN10]
VVAWNLAYSKFALKDAKKLSAAGLRDKAQNLLDLLAVDPFQNPPPYEKLVGDLRGAYSRRINIQHRLVYEVFRKEKTVRI
LRMWTHYD
VVAWNLAYSKFALKDAKKLSAAGLRDKAQNLLDLLAVDPFQNPPPYEKLVGDLRGAYSRRINIQHRLVYEVFRKEKTVRI
LRMWTHYD
Download Length: 267 bp
>T44576 NZ_AP028141:c1582142-1581876 [Polynucleobacter sp. HIN10]
GTGGTAGCTTGGAATTTGGCCTATTCCAAGTTTGCCCTTAAAGACGCTAAAAAACTCTCAGCTGCTGGATTAAGAGATAA
AGCCCAGAATTTATTGGATCTATTAGCAGTAGATCCGTTTCAAAATCCGCCGCCATACGAAAAGTTGGTGGGGGATTTAA
GGGGTGCTTATTCTCGCAGAATCAATATTCAACATCGTTTAGTTTACGAGGTTTTTCGTAAAGAAAAGACTGTTCGTATT
TTGAGGATGTGGACCCACTACGATTAA
GTGGTAGCTTGGAATTTGGCCTATTCCAAGTTTGCCCTTAAAGACGCTAAAAAACTCTCAGCTGCTGGATTAAGAGATAA
AGCCCAGAATTTATTGGATCTATTAGCAGTAGATCCGTTTCAAAATCCGCCGCCATACGAAAAGTTGGTGGGGGATTTAA
GGGGTGCTTATTCTCGCAGAATCAATATTCAACATCGTTTAGTTTACGAGGTTTTTCGTAAAGAAAAGACTGTTCGTATT
TTGAGGATGTGGACCCACTACGATTAA
Antitoxin
Download Length: 81 a.a. Molecular weight: 8946.35 Da Isoelectric Point: 8.5552
>AT44576 WP_215370129.1 NZ_AP028141:c1582378-1582136 [Polynucleobacter sp. HIN10]
MTTLTASEARAGLYRLIDQTAETHKPVLISGKRSNAVLISEEDWSAIQETLYLLAIPGMRESIKESMAEPLAKSKRTLKW
MTTLTASEARAGLYRLIDQTAETHKPVLISGKRSNAVLISEEDWSAIQETLYLLAIPGMRESIKESMAEPLAKSKRTLKW
Download Length: 243 bp
>AT44576 NZ_AP028141:c1582378-1582136 [Polynucleobacter sp. HIN10]
ATGACCACATTAACCGCAAGTGAAGCGCGAGCAGGTTTATATCGCTTAATTGATCAAACTGCAGAAACACATAAGCCAGT
GCTTATTTCAGGCAAGCGCAGTAATGCCGTTTTAATTTCTGAAGAAGATTGGAGTGCCATTCAGGAAACGCTGTATCTAT
TAGCTATCCCAGGAATGCGCGAGTCCATTAAAGAATCCATGGCTGAGCCTTTGGCTAAGAGCAAAAGGACATTGAAGTGG
TAG
ATGACCACATTAACCGCAAGTGAAGCGCGAGCAGGTTTATATCGCTTAATTGATCAAACTGCAGAAACACATAAGCCAGT
GCTTATTTCAGGCAAGCGCAGTAATGCCGTTTTAATTTCTGAAGAAGATTGGAGTGCCATTCAGGAAACGCTGTATCTAT
TAGCTATCCCAGGAATGCGCGAGTCCATTAAAGAATCCATGGCTGAGCCTTTGGCTAAGAGCAAAAGGACATTGAAGTGG
TAG